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populationgenomics
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automated-interpretation-pipeline
Rare Disease variant prioritisation MVP
MIT License
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Consider a formal schema
#347
MattWellie
closed
4 months ago
0
Make it clear which samples are in which callsets
#346
MattWellie
opened
5 months ago
0
Passes the wrong MT to SV labelling
#345
MattWellie
closed
5 months ago
0
Introducing models
#344
MattWellie
closed
4 months ago
0
Fix Comp-Het test
#343
MattWellie
closed
5 months ago
1
Adjust filters and simplify execution
#342
MattWellie
closed
5 months ago
0
"jvm jobs cannot be on lowmem machines"
#341
MattWellie
closed
5 months ago
0
Update Auth, condense to 1 Docker WF
#340
MattWellie
closed
5 months ago
0
Only generate hyperlinks for seqr families
#339
MattWellie
closed
5 months ago
0
GATK-SV Category
#338
MattWellie
closed
5 months ago
0
Implement backoff retrier for HTTP requests
#337
MattWellie
closed
5 months ago
0
Add a count for phenotype matched vars in report
#336
MattWellie
opened
5 months ago
0
Include dataset everywhere
#335
MattWellie
closed
5 months ago
0
Dependabot instigated req. bump, timeout increase
#334
MattWellie
closed
5 months ago
0
Make better use of Hail Features
#333
MattWellie
opened
6 months ago
1
Bracket correction
#332
MattWellie
closed
6 months ago
0
Update VEP, region filtering on reannotation
#331
MattWellie
closed
6 months ago
0
Updates module arguments
#330
MattWellie
closed
6 months ago
0
Fix AM presentation in the report
#329
MattWellie
closed
6 months ago
0
Even more flexible category registration
#328
MattWellie
closed
6 months ago
0
Added AlphaMissense Cat6 class
#327
MattWellie
closed
6 months ago
0
Clarify dataset in in-module use of output_path
#326
MattWellie
closed
6 months ago
0
Fix AIP as pipeline stages
#325
MattWellie
closed
6 months ago
0
Linter changes
#324
MattWellie
closed
6 months ago
0
Fix report hunter
#323
MattWellie
closed
6 months ago
1
I have broken the report index page
#322
MattWellie
closed
6 months ago
1
update to use new analysis types
#321
MattWellie
closed
6 months ago
1
Updates for pipeline running
#320
MattWellie
closed
6 months ago
1
Avoid broken hail version during build
#319
MattWellie
closed
6 months ago
0
Solved case source of truth from config
#318
MattWellie
closed
6 months ago
0
Remove solved cases
#317
MattWellie
closed
6 months ago
1
Whittle out solved families
#316
MattWellie
closed
6 months ago
0
Additional Latest-only report
#315
MattWellie
closed
8 months ago
0
Adds type and trio True/False to family metadata
#314
MattWellie
opened
8 months ago
0
Correction to clinvar no date supplied
#313
MattWellie
closed
8 months ago
0
No Really, Remove Hail Reliance?
#312
MattWellie
opened
8 months ago
0
Updates to ClinVar parsing
#311
MattWellie
closed
8 months ago
0
Add family size to family metadata?
#310
kdahlo
closed
5 months ago
1
various followup metamist changes
#309
MattWellie
closed
10 months ago
0
Seqr integration changes
#308
MattWellie
closed
10 months ago
0
Metamist api transformation
#307
MattWellie
closed
10 months ago
0
Use minimised representation
#306
MattWellie
closed
11 months ago
0
Various updates to filtering
#305
MattWellie
closed
11 months ago
0
Tweaks to variant labelling
#304
MattWellie
closed
11 months ago
0
Small bug in application of MOI from PanelApp
#303
MattWellie
closed
10 months ago
0
Retrospective Reanalysis Framework
#302
MattWellie
closed
10 months ago
2
Release Clinvar data
#301
MattWellie
closed
11 months ago
0
CSIRO annotation Mini-project
#300
MattWellie
closed
11 months ago
0
Dag correction
#299
MattWellie
closed
11 months ago
2
dag correction
#298
MattWellie
closed
11 months ago
0
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