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rformassspectrometry
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Spectra
Low level infrastructure to handle MS spectra
https://rformassspectrometry.github.io/Spectra/
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feat: add filterMzRange and filterMzValues
#134
jorainer
closed
4 years ago
5
Filtering spectra by m/z
#133
jorainer
closed
3 years ago
2
Add export functionality to `Spectra`
#132
jorainer
closed
4 years ago
1
Error compareSpectra with type = "inner"
#131
jorainer
closed
4 years ago
3
Make sure comparison with empty spectra yields N/A
#130
sneumann
closed
3 years ago
4
Bug in Spectra vignette
#129
plantton
closed
4 years ago
3
Peaks and spectra data accessors and replacement methods
#128
lgatto
closed
4 years ago
1
Spectra serialisation
#127
lgatto
opened
4 years ago
0
removePeaks with relative treshold
#126
michaelwitting
closed
4 years ago
5
feat: add export,Spectra method (issue #124)
#125
jorainer
closed
4 years ago
0
New export method
#124
lgatto
closed
4 years ago
11
Convert MSnbase::Spectrum2 <-> Spectra object
#123
korseby
closed
3 years ago
19
docs: expand documentation on `reset`
#122
jorainer
closed
4 years ago
0
feat: add reset method (issue #119)
#121
jorainer
closed
4 years ago
0
Bug in Spectra contsructor
#120
lgatto
closed
4 years ago
5
New reset method
#119
lgatto
closed
4 years ago
1
Add chunk-based data loading in compareSpectra
#118
jorainer
closed
4 years ago
1
Check that we're not overestimating similarity in compareSpectra
#117
jorainer
opened
4 years ago
0
Improve performance of compareSpectra
#116
jorainer
closed
4 years ago
1
Improve .peaksapply performance
#115
jorainer
closed
4 years ago
1
refactor: use n2mfrow to layout multiple spectra
#114
sgibb
closed
4 years ago
0
Discussion style plotting arguments
#113
sgibb
closed
4 years ago
3
Preparations for submission to Bioconductor
#112
jorainer
closed
4 years ago
0
Plot spectra mirror
#111
jorainer
closed
4 years ago
0
Add plotSpectraMirror function (issue #80)
#110
jorainer
closed
4 years ago
0
tests: add some more unit tests to improve coverate
#109
jorainer
closed
4 years ago
0
Add plotSpectraOverlay (issue #80)
#108
jorainer
closed
4 years ago
1
ci: remove Travis and enable packagedown in GA (issue #105)
#107
jorainer
closed
4 years ago
1
docs: refer plotSpectra() in Spectra man page
#106
lgatto
closed
4 years ago
0
CI: travis or GHA
#105
lgatto
closed
4 years ago
4
First base R plotting function for Spectra
#104
jorainer
closed
4 years ago
0
other: maintainer@rformassspectrometry.org is maintainer
#103
lgatto
closed
4 years ago
0
Replace the `clean` method with `filterIntensity` (issue #89)
#102
jorainer
closed
4 years ago
1
refactor: replace removePeaks with replaceIntensitiesBelow
#101
jorainer
closed
4 years ago
1
Add/fix github actions
#100
jorainer
closed
4 years ago
2
fix: support import of mzML files with different header columns
#99
jorainer
closed
4 years ago
1
Add containsMz and containsNeutralLoss
#98
jorainer
closed
4 years ago
1
refactor: import ndotproduct instead of dotproduct from MsCoreUtils
#97
jorainer
closed
4 years ago
2
hasMz or containsMz
#96
michaelwitting
closed
4 years ago
5
spectraData,Spectra does not return m/z and intensity values
#95
jorainer
closed
4 years ago
2
refactor: mz and intensity aren't part of the default spectraVariables anymore
#94
lgatto
closed
4 years ago
2
Backends for the meta-data
#93
lgatto
closed
4 years ago
6
spectraData pulls mz and intenstities
#92
lgatto
closed
4 years ago
20
Some wording improving removePeaks() and clean()
#90
sneumann
closed
4 years ago
2
optimize function names (removePeaks, clean)
#89
schymane
closed
4 years ago
14
Drop spectra varibles that are only NA
#88
jorainer
closed
4 years ago
2
Error: object ‘asRle’ is not exported by 'namespace:MsCoreUtils'
#87
cpanse
closed
4 years ago
2
[API] Rename `as.list`?
#86
sgibb
closed
4 years ago
10
Remove all functionality related to Rle-based compression
#85
jorainer
closed
4 years ago
4
Evaluation rhdf5client to provide an remote HDF5 backend
#84
sgibb
opened
4 years ago
20
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