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rformassspectrometry
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Spectra
Low level infrastructure to handle MS spectra
https://rformassspectrometry.github.io/Spectra/
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Plotting fails with empty spectra
#175
ococrook
closed
3 years ago
3
Performance issue adding new colums to a DataFrame
#174
jorainer
opened
3 years ago
6
Show method for Spectra too long
#173
ococrook
closed
3 years ago
4
Reproduce the example from MSnbase vignette
#172
plantton
closed
3 years ago
3
GNPS-similarity measure
#171
jorainer
closed
3 years ago
10
Error: 'joinSpectraData' is not an exported object from 'namespace:Spectra'
#170
plantton
closed
3 years ago
0
refactor: support ... in pickPeaks (issue #168)
#169
jorainer
closed
3 years ago
0
pickPeaks missing ...
#168
ococrook
closed
3 years ago
3
pickPeaks, halfWindowSize
#167
ococrook
closed
3 years ago
3
Add support for arbitrary parameters in filterIntensity (issue #164)
#166
jorainer
closed
3 years ago
1
Partially fix github actions (issue #161)
#165
jorainer
closed
3 years ago
0
passing additional parameters to filterIntensity
#164
ococrook
closed
3 years ago
1
fix: fix show,ProcessingStep (issue #162)
#163
jorainer
closed
3 years ago
7
Bug in show,ProcessingStep
#162
lgatto
closed
3 years ago
2
Fix github actions
#161
jorainer
closed
3 years ago
4
feat: new joinSpectraData() function
#160
lgatto
closed
3 years ago
9
feat: add [[ and [[<-,MsBackend
#159
jorainer
closed
3 years ago
2
fix: document and export labelCol parameter (issue #157)
#158
jorainer
closed
3 years ago
0
labelCol
#157
lgatto
closed
3 years ago
2
refactor: replace Spectra,DataFrame by Spectra,ANY
#156
jorainer
closed
3 years ago
3
addFragments [was splotSpectraWithFragments()]
#155
lgatto
closed
3 years ago
8
Fix problem in export,MsBackendMzR that fails for empty spectra
#154
jorainer
closed
3 years ago
0
Round retention time in plot titles
#153
lgatto
closed
3 years ago
2
Add a new Spectra constructor for DBIConnection
#152
jorainer
closed
3 years ago
1
Export the mzXML?
#151
lgatto
closed
3 years ago
2
Question/Documentation: Hdf5 backends
#150
ococrook
closed
3 years ago
2
Merging additional spectra variables
#149
lgatto
closed
3 years ago
12
Master upstream
#148
jorainer
closed
3 years ago
6
fix: replacing spectraData on Spectra does not remove m/z
#147
jorainer
closed
3 years ago
4
manipulating spectraData clears peaksData
#146
stanstrup
closed
3 years ago
7
Exporting to mzML
#145
ococrook
closed
2 years ago
13
fix: ensure backend is changed in Spectra,character constructor
#144
jorainer
closed
3 years ago
5
Backend confusion
#143
ococrook
closed
3 years ago
5
Ion Mobility
#142
ococrook
opened
3 years ago
16
Ensure combineSpectra works also with a non-empty processing queue
#141
jorainer
closed
3 years ago
1
Processing in combineSpectra
#140
michaelwitting
closed
3 years ago
4
fix: dropNaSpectraVariables no longer drops mz and intensity
#139
jorainer
closed
3 years ago
0
dropNaSpectraVariables drop m/z and intensity
#138
michaelwitting
closed
3 years ago
11
MsBackendHdf5Peaks cannot load large mzML files simultaneously
#137
plantton
opened
3 years ago
2
Add support for user-provided function in filterIntensity
#136
jorainer
closed
3 years ago
2
Add to Spectra object when backend is MsBackendCompDb
#135
stanstrup
opened
3 years ago
6
feat: add filterMzRange and filterMzValues
#134
jorainer
closed
3 years ago
5
Filtering spectra by m/z
#133
jorainer
closed
3 years ago
2
Add export functionality to `Spectra`
#132
jorainer
closed
3 years ago
1
Error compareSpectra with type = "inner"
#131
jorainer
closed
3 years ago
3
Make sure comparison with empty spectra yields N/A
#130
sneumann
closed
3 years ago
4
Bug in Spectra vignette
#129
plantton
closed
3 years ago
3
Peaks and spectra data accessors and replacement methods
#128
lgatto
closed
3 years ago
1
Spectra serialisation
#127
lgatto
opened
3 years ago
0
removePeaks with relative treshold
#126
michaelwitting
closed
3 years ago
5
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