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rki-mf1
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amplisim
Plain simple amplicon sequence simulator for in-silico genomic sequencing assays
Apache License 2.0
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Update README
#20
Krannich479
closed
6 months ago
0
[Update README] Add description about MASON/ART to utilize the amplicons
#19
Krannich479
opened
6 months ago
0
Add sanity check: verify if the BED file delimiter is actually tab and not multi-whitespace
#18
Krannich479
opened
6 months ago
0
Add sanity check: is the intersection of reference chromosome IDs and primer chromosome IDs >0
#17
Krannich479
opened
6 months ago
0
Error generating the amplicons
#16
mariaelf97
closed
6 months ago
4
Update Makefile to streamline bioconda build
#15
Krannich479
opened
12 months ago
0
delete test script; add minimal test data
#14
Krannich479
closed
12 months ago
0
AmpliconGenerator throws an std::out_of_range error if a primer range is outside reference sequence length
#13
Krannich479
opened
12 months ago
0
add minimal working example
#12
Krannich479
closed
1 year ago
0
Implement CLI parameters for more precise variant likelihoods of MM/INS/DEL
#11
Krannich479
opened
1 year ago
2
Dev
#10
Krannich479
closed
1 year ago
0
README updates
#9
Krannich479
closed
1 year ago
0
Output should be SAM format to blend in with samtools
#8
Krannich479
opened
1 year ago
0
Add parameter to control depth of amplicons
#7
Krannich479
closed
1 year ago
1
add CI case test using public SC2 data
#6
Krannich479
closed
1 year ago
0
Include Sars-Cov-2 data into Github Actions test
#5
Krannich479
closed
1 year ago
1
Update README
#4
Krannich479
closed
1 year ago
1
Providing a seed (-s) still returns non-deterministic output
#3
Krannich479
closed
1 year ago
1
improved srand() placement and CLI argument -s is now implemented controlling the random seed
#2
Krannich479
closed
1 year ago
0
add initial argument parser
#1
Krannich479
closed
1 year ago
1