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saezlab
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CARNIVAL
CAusal Reasoning for Network Identification with integer VALue programming in R
https://saezlab.github.io/CARNIVAL/
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Feature Request: Omnipath network from original paper
#100
josiahbjorgaard
closed
2 months ago
2
General Recommendations for preprocessing RNA-Seq data
#99
nijibabulu
closed
5 months ago
2
Using custom network for transcription factor input
#98
Sharm8
closed
1 year ago
11
added Rosa's network visualisation function
#97
adugourd
opened
1 year ago
0
added prune_network function
#96
adugourd
closed
1 year ago
0
[BUG] Your bug or feature request
#95
LorNic97
closed
1 year ago
3
Transcription factors (TFs) absent from final carnival result
#94
anu-bioinfo
closed
1 year ago
12
Carnival usage error
#93
rengulA
closed
1 year ago
2
typo in DESCRIPTION
#92
deeenes
closed
1 year ago
1
error running Carnival with cbc solver
#91
elcamb
closed
2 years ago
1
Description about the output
#90
harimchun
closed
2 years ago
4
progenyMembers.RData
#89
anikaliu
closed
2 years ago
2
Error in file(file, "rt"): cannot open the connection
#88
whiteorchid
closed
2 years ago
2
Dev
#87
gabora
closed
2 years ago
0
Adding GH actions + fix bioccheck errors/warnings
#86
gabora
closed
2 years ago
0
Fix biocchecks
#85
gabora
closed
2 years ago
0
Add gh actions
#84
gabora
closed
2 years ago
1
fixing path-related and lpsolve issues, adding lpsolve, cplex and cbc tests; fix parsing problems
#83
gabora
closed
2 years ago
0
runCARNIVAL
#82
fereshtehvosta
closed
2 years ago
1
Fix workdir
#81
gabora
closed
2 years ago
0
Failing tests because local files were used
#80
gabora
closed
2 years ago
1
there is a unhandled error if the output folder does not exist. This …
#79
gabora
closed
2 years ago
2
Some issues
#78
fereshtehvosta
closed
2 years ago
2
How to use CARNIVAL to fit multiple conditions data
#77
olapuentesantana
closed
1 year ago
2
Updated the vignette with information on Gurobi.
#76
BartoszBartmanski
closed
2 years ago
0
Gurobi needs documentation
#75
gabora
closed
2 years ago
0
No DOT figure
#74
harrytr
closed
2 years ago
1
Reported 0 for perturbations activity
#73
ivanovaos
closed
2 years ago
1
cbc error : 'data' must be of a vector type, was 'NULL' despite solution found
#72
laylagerami
closed
2 years ago
1
Fix for getting multiple solutions from gurobi solver.
#71
BartoszBartmanski
closed
3 years ago
0
Another version(V3) of the function that creates constraints 6 and 7
#70
dingquanyu
closed
3 years ago
3
Wrong column name inside the measurementsDf?
#69
dingquanyu
closed
3 years ago
1
Update solvers_cplex__solve_cplex.R
#68
pierremj
closed
3 years ago
0
Added distributed gurobi.
#67
BartoszBartmanski
closed
3 years ago
0
Fixed issues with cplex and cbc. Added gurobi as a possible solver.
#66
BartoszBartmanski
closed
3 years ago
0
Very different results with latest CARNIVAL release
#65
laylagerami
closed
3 years ago
5
Writing cplex command file -> error thrown
#64
ulrmu
closed
3 years ago
23
Warning message/fix when cplex working folder or output folder are not empty
#63
ivanovaos
closed
2 years ago
0
CBC multithreading arguments
#62
ahmedasadik
closed
2 years ago
2
Running carnival in parallel
#61
ahmedasadik
closed
2 years ago
7
Add Matteo Presentation
#60
MatteoSpatuzzi
closed
3 years ago
0
Devel 2 1
#59
MatteoSpatuzzi
closed
3 years ago
0
fixing issue with negative constrains for lp solve
#58
gabora
closed
3 years ago
0
Testing constraints
#57
MatteoSpatuzzi
closed
3 years ago
1
First test for constraints
#56
MatteoSpatuzzi
closed
3 years ago
1
minor fixes, updating the exporting code to be in line with the previ…
#55
ivanovaos
closed
3 years ago
0
Error in resList[[1]] : subscript out of bounds
#54
ivanovaos
closed
3 years ago
0
Details about output
#53
asumann
closed
3 years ago
6
Bioconductor update?
#52
gabora
closed
3 years ago
1
ILP issue
#51
asumann
closed
3 years ago
11
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