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sanger-pathogens
/
seroba
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
https://sanger-pathogens.github.io/seroba/
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Update docs
#81
Oliver-Lorenz-dev
closed
1 week ago
0
Error on database
#80
portillanath
opened
1 month ago
1
There is not detailed_serogroup_info in the output folder
#79
juanjo255
closed
2 weeks ago
2
errors during installation via conda/mamba
#78
ulrichmarkus
opened
9 months ago
2
Run Seroba with PneumoCat v1.2.1??
#77
arif-tanmoy
opened
1 year ago
2
Add automated test on PR
#76
HarryHung
closed
1 year ago
0
Display correct version information
#75
HarryHung
closed
1 year ago
1
Fix iteration over None
#74
Lfulcrum
closed
1 year ago
1
TypeError: argument of type 'NoneType' is not iterable
#73
HarryHung
closed
1 year ago
5
Swiss_NT
#72
tauqeer9
opened
1 year ago
1
CVE-2007-4559 Patch
#71
TrellixVulnTeam
opened
1 year ago
0
Job runs for 17+ hours without completion
#70
emmadoughty
opened
2 years ago
0
Names for forwards and reverse reads does not match. Cannot continue
#69
kdyoung100
opened
2 years ago
1
let tempfile determine temp dir location
#68
rpetit3
opened
2 years ago
0
Error:
#67
lexleong
closed
2 years ago
1
Seroba test error while installed with conda
#66
sreerampeela
opened
2 years ago
0
serotyping from assemblies as input
#65
abrozzi
opened
2 years ago
3
Hi..any suggestions on how this error was resolved for you?
#64
sreerampeela
opened
2 years ago
1
Conda install 'createDBs' and 'getPneumocat' errors
#63
rpetit3
opened
2 years ago
1
latest build on docker hub is non functional
#62
cimendes
opened
2 years ago
0
Dependencies issues when using seroba through conda
#61
AleSR13
opened
3 years ago
7
Can't build the ariba database
#60
wmiellet
closed
2 years ago
1
biopython issue!
#59
bhclement
opened
3 years ago
0
Got an error massage through docker with Ubuntu20.04 LTS
#58
snakano0527
closed
3 years ago
1
Default for runSerotyping coverage not being set correctly
#57
AdmiralenOla
opened
3 years ago
1
removed unused import biopython.Alphabet
#56
gindar
closed
3 years ago
1
11A/11C Misidentification
#55
garfinjm
closed
4 years ago
4
gzip: No such file or directory
#54
km-bit
closed
3 years ago
3
KeyError:'24B'
#53
km-bit
opened
4 years ago
3
Remove pathogen informatics email from page
#52
kathryn1995
closed
4 years ago
0
Typo in docs
#51
tseemann
closed
4 years ago
0
Make a git tag for 1.0.2 ?
#50
tseemann
closed
4 years ago
2
Bug fix due to ariba --max_noncoding_length parameter
#49
eppinglen
closed
4 years ago
1
"Bash Run_nucmer.sh" Error
#48
abcdtree
closed
4 years ago
3
The "cd_cluster.tsv" created recently is different from the previous one
#47
abcdtree
closed
4 years ago
4
nucmer dependency error
#46
jacorvar
closed
4 years ago
1
seroba stopping signal recieved 28
#45
varunshamanna
closed
5 years ago
3
No detailed output file
#44
andersgs
opened
5 years ago
2
After kmc, error "Stopping! Signal received: 13"
#43
tseemann
opened
5 years ago
2
Names for forwards and reverse reads does not match. Cannot continue
#42
tseemann
opened
5 years ago
10
Pass --coverage through to the run function
#41
antunderwood
closed
3 years ago
0
Increase version number
#40
puethe
closed
5 years ago
0
small update to README
#39
antunderwood
closed
5 years ago
0
remove need for trailing slash in DB path
#38
antunderwood
closed
5 years ago
0
Can't build DB? False | ariba prepare_ref | no such file
#37
tseemann
opened
5 years ago
4
YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated,
#36
tseemann
opened
5 years ago
0
error
#35
bhclement
closed
5 years ago
1
install from source
#34
jacorvar
opened
5 years ago
1
Empty summary.tsv file
#33
pneumowidow
closed
5 years ago
2
Include tests in README
#32
ssjunnebo
closed
5 years ago
0
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