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sartorlab
/
mint
A pipeline for the integration of DNA methylation and hydroxymethylation data
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How can I obtain the table of complete annotations described in the README.md file?
#27
mdperry
opened
3 years ago
2
Data sample type
#26
yifeisun03
closed
4 years ago
3
paired read
#25
zzz2010
closed
6 years ago
1
csaw and DSS replace PePr and methylSig, respectively
#24
rcavalcante
closed
7 years ago
0
v0.3.0-beta into master
#23
rcavalcante
closed
7 years ago
0
Merge v0.2.0-beta
#22
rcavalcante
closed
8 years ago
0
v0.1.5-beta into master
#21
rcavalcante
closed
8 years ago
0
v0.1.4-beta into master
#20
rcavalcante
closed
8 years ago
0
v0.1.2-beta into master
#19
rcavalcante
closed
8 years ago
0
v0.1.1-beta into master
#18
rcavalcante
closed
8 years ago
0
Samples belonging to >2 comparison groups are mishandled
#17
rcavalcante
closed
8 years ago
1
Merge v0.1.0-beta into master
#16
rcavalcante
closed
8 years ago
0
Transition to bismark v0.16.1 and FastQC v0.11.5
#15
rcavalcante
closed
8 years ago
0
Update function calls for annotatr v0.6.0
#14
rcavalcante
closed
8 years ago
0
Merge refactor into master
#13
rcavalcante
closed
8 years ago
0
Convert to make
#12
rcavalcante
closed
8 years ago
0
UCSC compression tools do not work with subcommands
#11
rcavalcante
closed
8 years ago
3
bedtools complement reporting chromosome size file has no contents
#10
rcavalcante
closed
8 years ago
2
Compress output files where possible
#9
rcavalcante
closed
8 years ago
1
Fix bigWig creation of pulldown coverage
#8
rcavalcante
closed
8 years ago
0
Clarify 0-based and 1-based files
#7
rcavalcante
closed
8 years ago
0
Make argument for cutoff parameter in methylation extractor
#6
rcavalcante
closed
8 years ago
0
Make arguments for trim_galore parameters
#5
rcavalcante
closed
8 years ago
0
Develop a test suite
#4
rcavalcante
closed
8 years ago
4
Refactor visualization code to use annotatr
#3
rcavalcante
closed
8 years ago
2
Migrate to using bowtie2 with bismark
#2
rcavalcante
closed
8 years ago
1
Switch from cutadapt to trim_galore
#1
rcavalcante
closed
8 years ago
1