scilus nf-scil issues - Githubissues

scilus / nf-scil

SCIL Nextflow Toolbox

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update testdata and subworkflow load_test_data

#165 arnaudbore closed 1 month ago
1
Update topup and eddy with gzip md5 validation

#164 arnaudbore closed 3 months ago
1
[IMPROV] Quality of Life improvments for the devcontainer

#163 AlexVCaron closed 3 months ago
2
[Improvement][WIP] add lesion option in WM segmentation

#162 ThoumyreStanislas closed 2 months ago
0
[Module] Freesurfer registration/convert

#161 anroy1 opened 3 months ago
0
[Module] Stats tractometry module.

#160 ThoumyreStanislas closed 3 months ago
0
[Module] add bundle uniformize module

#159 ThoumyreStanislas closed 4 months ago
0
[Module] Label Map module.

#158 gagnonanthony closed 4 months ago
0
[Module] Resample tractogram module.

#157 gagnonanthony closed 4 months ago
0
[Restructuration] Improve homogeneity of our modules

#156 arnaudbore closed 2 months ago
1
[Module] Fixel afd module

#155 ThoumyreStanislas closed 4 months ago
0
[Module] Compute centroids module.

#154 gagnonanthony closed 4 months ago
0
[Module] Remove invalid streamlines module.

#153 gagnonanthony closed 4 months ago
0
[WIP] Fix failing linting because of failed clone

#152 AlexVCaron closed 4 months ago
1
[WIP][Module] Fastsurfer

#151 arnaudbore closed 3 weeks ago
2
[Cleaning] Remove old tests and remove module sizeof no used anymore

#150 arnaudbore closed 4 months ago
0
[MODULE] Migrate tests registraction tractogram

#149 ThoumyreStanislas closed 4 months ago
0
[MODULE] Migrate tests reconst noddi and diffusivitypriors

#148 arnaudbore closed 4 months ago
2
Update meanfrf tests

#147 karanphil closed 4 months ago
1
[Subworkflow] BundleSeg subworkflow.

#146 gagnonanthony closed 4 months ago
0
Migrate extractb0

#145 arnaudbore closed 4 months ago
0
[Module] Update preproc n4, gibbs and normalize

#144 arnaudbore closed 4 months ago
0
Migrate tracking modules to scilpy 2.0.0 + nf-test.

#143 arnaudbore closed 4 months ago
0
Migrate register and registration modules to scilpy 2.0.0 + nf-test.

#142 arnaudbore closed 5 months ago
0
Migrate segmentation module to scilpy 2.0.0 + nf-test.

#141 arnaudbore closed 4 months ago
0
Migrate image/resample to scilpy 2.0 + nf-test

#140 gagnonanthony closed 4 months ago
0
Migrate Topup and Eddy modules to nf-test

#139 arnaudbore closed 5 months ago
0
Migrate io/readbids to scilpy 2.0.0 + nf-test

#138 gagnonanthony closed 5 months ago
0
Migrate denoising modules to scilpy 2.0.0 + nf-test.

#137 gagnonanthony closed 5 months ago
5
Current nf-core and nf-test limitations

#136 AlexVCaron opened 5 months ago
5
[WIP] Migrate EDDY TOPUP nf-test

#135 arnaudbore closed 5 months ago
1
Migrate bundle/recognize module to scilpy 2.0.0 + nf-test

#134 gagnonanthony closed 5 months ago
0
[TEST] Move .test_data content to dvc

#133 AlexVCaron closed 5 months ago
0
Migrate betcrop modules to scilpy 2.0 + nf-test.

#132 gagnonanthony closed 5 months ago
4
update antsbet archive

#131 AlexVCaron closed 5 months ago
0
Update scilpy and nf-scil data archives listing. Fix cropvolume

#130 AlexVCaron closed 5 months ago
0
[Subworkflow][WIP] Preprocessing DWI

#128 Manonedde closed 5 months ago
0
Fix weird problem in LOAD_TEST_DATA associated to tmp

#127 AlexVCaron closed 5 months ago
0
Fix setup-nf-test version

#126 AlexVCaron closed 5 months ago
0
[Bugfix] Improve testing for image/resample module

#125 anroy1 closed 5 months ago
2
Add environment schema file for linting

#124 AlexVCaron closed 5 months ago
0
Update freesurfer package

#123 AlexVCaron closed 5 months ago
0
[Module] Freesurfer BET

#122 anroy1 closed 3 months ago
1
Add nf-scil freesurfer test package

#121 AlexVCaron closed 5 months ago
0
[WIP] Migration from pytest to nf-test.

#120 gagnonanthony closed 5 months ago
7
Add data for recognize and clean bundles

#119 AlexVCaron closed 6 months ago
0
Document test execution with local files

#118 AlexVCaron opened 6 months ago
0
Upgrade nf-core

#117 AlexVCaron closed 5 months ago
1
Update documentation for tests using nf-test

#116 AlexVCaron closed 2 months ago
2
[Subworkflow] Registration subworkflow.

#115 gagnonanthony closed 5 months ago
4

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