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pertpy
Perturbation Analysis in the scverse ecosystem.
https://pertpy.readthedocs.io/en/latest/
MIT License
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Pseudobulk improvements
#529
Lilly-May
closed
4 months ago
0
Add more detailed tool explanations
#528
Zethson
closed
4 months ago
1
Added tasccoda example plots
#527
namsaraeva
closed
4 months ago
1
Name plotting functions last in the methods table of the classes
#526
Zethson
closed
3 months ago
0
Unexpected keyword argument `size` when running Milo `plot_da_beeswarm`
#525
namsaraeva
closed
3 months ago
0
Augur example code throws a TypeError
#524
namsaraeva
closed
4 months ago
0
[pre-commit.ci] pre-commit autoupdate
#523
pre-commit-ci[bot]
closed
4 months ago
1
DIALOGUE implementation completeness?
#522
pakiessling
closed
4 months ago
2
Any preprint?
#521
SNOL2
closed
4 months ago
1
ete3 throws an error when calling draw_effects()
#520
namsaraeva
closed
4 months ago
1
scCODA covariate has non-unique values
#519
schroeme
closed
4 months ago
4
Add LISI score
#518
Zethson
closed
4 months ago
0
Add knn imputation
#517
Zethson
closed
5 months ago
1
pt.pl.guide.heatmap doesn't work with sparse matrix
#516
Zethson
closed
3 months ago
1
Augur warnings
#515
Zethson
closed
5 months ago
0
Consider renaming cmap to palette for coda plots
#514
Zethson
closed
3 months ago
0
Update _datasets.py
#513
tessadgreen
closed
5 months ago
0
Add combosciplex
#512
Zethson
closed
5 months ago
0
Add examples to plotting functions
#511
namsaraeva
closed
4 months ago
5
Plot example
#510
namsaraeva
closed
5 months ago
0
[pre-commit.ci] pre-commit autoupdate
#509
pre-commit-ci[bot]
closed
5 months ago
0
Augur plotting module causes AnnData and sklearn warnings
#508
namsaraeva
closed
4 months ago
0
Augur warnings
#507
namsaraeva
closed
5 months ago
0
Removed warnings when running Augur scatterplot
#506
namsaraeva
closed
5 months ago
0
Added links to tutorials
#505
namsaraeva
closed
5 months ago
0
[pre-commit.ci] pre-commit autoupdate
#504
pre-commit-ci[bot]
closed
5 months ago
0
numba pre-release breaks tests
#503
Zethson
closed
5 months ago
2
Bootstrap
#502
eroell
closed
1 month ago
3
Pseudobulk space improvements
#501
Zethson
closed
4 months ago
0
Add plotting example output to every plotting function
#500
kcArtemis
closed
4 months ago
0
Adding plotting example
#499
kcArtemis
closed
5 months ago
0
Add highly variable genes option to perturbation_signature
#498
Zethson
closed
5 months ago
1
Bootstrap support for error estimation
#497
eroell
opened
5 months ago
0
mixscape plots get plotted twice
#496
Zethson
closed
5 months ago
0
L1000 comparisons
#495
Zethson
opened
5 months ago
0
[pre-commit.ci] pre-commit autoupdate
#494
pre-commit-ci[bot]
closed
5 months ago
0
Add Weissman dataloader
#493
Zethson
closed
5 months ago
1
Harmonize pertpy tutorials
#492
Zethson
closed
5 months ago
0
Generalize de_res_to_anndata
#491
Zethson
closed
2 weeks ago
0
Add function to DifferentialGeneExpression which adds our new DE results to an AnnData slot (scanpy format)
#490
Zethson
closed
5 months ago
0
Add DE set comparisons
#489
Zethson
closed
5 months ago
1
More informative images in tutorial gallery
#488
Lilly-May
closed
5 months ago
1
Add perturbation space tutorial
#487
Lilly-May
closed
5 months ago
1
DE set comparisons
#486
Zethson
closed
5 months ago
1
Replace Tutorial Icons
#485
Lilly-May
closed
5 months ago
0
Improving logging
#484
Zethson
closed
2 months ago
0
Expand metadata support for enrichment
#483
Zethson
closed
2 months ago
2
Add enrichment
#482
Zethson
closed
5 months ago
1
Save perturbation and clustering labels as categorical
#481
Lilly-May
closed
6 months ago
1
Add Drug metadata from chembl
#480
Zethson
closed
6 months ago
0
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