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signaturescience
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skater
SKATE R Utilities
https://signaturescience.github.io/skater/
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v0.1.2
#58
stephenturner
closed
1 year ago
0
Fix for dev dplyr
#57
hadley
closed
1 year ago
1
Convert `degree_truth` to character early
#56
DavisVaughan
closed
2 years ago
0
Revisions
#55
stephenturner
closed
2 years ago
0
F1000 submission
#54
stephenturner
closed
2 years ago
0
F1000Research paper
#53
stephenturner
closed
2 years ago
0
format submission for JOSS
#52
stephenturner
closed
3 years ago
0
Vignette and draft manuscript
#51
stephenturner
closed
3 years ago
0
Create a vignette
#50
stephenturner
closed
3 years ago
3
LICENSE
#49
stephenturner
closed
3 years ago
0
Write a paper
#48
stephenturner
closed
3 years ago
9
Add map installed data and update read_map() functionality
#47
stephenturner
closed
3 years ago
1
optimize kin2degree
#46
stephenturner
closed
3 years ago
0
edits to read_ibd and ibd2kin and read_map
#45
vpnagraj
closed
3 years ago
5
read_ibd dies on empty file
#44
genignored
closed
3 years ago
4
first pass at including ibd utils and relatedness functions
#43
vpnagraj
closed
3 years ago
17
Reciprocal RMSE + 0.5 on categorical data
#42
stephenturner
closed
3 years ago
3
Arrange IDs and Plink2 KING reader
#41
stephenturner
closed
3 years ago
0
New function to read in plink2's KING robust estimator results
#40
stephenturner
closed
3 years ago
0
New function to order IDs, and put into all read_ functions
#39
stephenturner
closed
3 years ago
1
more robust accuracy metrics for confusion matrix counts
#38
vpnagraj
closed
3 years ago
5
estimate kinship from IBD segments (both simulated and detected)
#37
stephenturner
closed
3 years ago
13
Ped2kinpairs interesting situation
#36
genignored
closed
3 years ago
2
Alterations to read_fam
#35
genignored
closed
3 years ago
6
be explicit about namespaces fixes #33 see also #32
#34
stephenturner
closed
3 years ago
0
remove importFrom in confusion_matrix
#33
stephenturner
closed
3 years ago
0
IBIS coef read function and example data
#32
genignored
closed
3 years ago
0
read_akt
#31
genignored
closed
3 years ago
1
rebuild readme test CI
#30
stephenturner
closed
3 years ago
0
ci on nonmaster
#29
stephenturner
closed
3 years ago
0
Estimated cM from kinship coefficient
#28
stephenturner
closed
3 years ago
0
Modified confusion_matrix from confusionMatrix
#27
stephenturner
closed
3 years ago
0
Expand founders
#26
stephenturner
closed
3 years ago
0
Confusion matrix
#25
stephenturner
closed
3 years ago
3
Type checking on plot_pedigree()
#24
stephenturner
closed
3 years ago
0
Minor issue with plot_pedigree
#23
genignored
closed
3 years ago
1
Less stringent 1000G founders
#22
stephenturner
closed
3 years ago
0
Documentation, fam2ped api change, data
#21
stephenturner
closed
3 years ago
0
split read and write from fam2ped
#20
stephenturner
closed
3 years ago
0
Degree inference; tests
#19
stephenturner
closed
3 years ago
0
use testthat ; use test
#18
stephenturner
closed
3 years ago
0
Potential issue with ped2kinpair
#17
genignored
closed
3 years ago
1
New function to infer degree from kinship coefficient
#16
stephenturner
closed
3 years ago
3
add badge #13
#15
stephenturner
closed
3 years ago
0
suppress note for lifecycle import
#14
stephenturner
closed
3 years ago
0
Add simple CI
#13
stephenturner
closed
3 years ago
4
usethis::use_gpl3_license() fixes #4
#12
stephenturner
closed
3 years ago
0
Add 1000G pedigree, parse, unrelated sample IDs w/ data
#11
stephenturner
closed
3 years ago
0
Docs, lifecycle
#10
stephenturner
closed
3 years ago
0
add @genignored to author list
#9
stephenturner
closed
3 years ago
0
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