smith-chem-wisc MetaMorpheus issues

smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

MIT License

91 stars 46 forks source link

issues

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[WIP] Remove decoys identical to targets

#2393 Alexander-Sol closed 3 months ago
0
Increased QValue cutoff for calibrating PSMs to 0.01

#2392 Alexander-Sol closed 3 months ago
1
Net eight

#2391 trishorts closed 3 months ago
4
[WIP] Reworking PEP to prevent cross-contamination

#2390 Alexander-Sol closed 3 months ago
2
Pep rework

#2389 Alexander-Sol closed 4 months ago
0
Custom Glycan Library and Enzyme Cleavage Sites for O-Glycopeptide Searches in O-Pair

#2388 MuZi-Y opened 4 months ago
3
Changes to PEP Calculation and Filtering

#2387 Alexander-Sol closed 3 months ago
2
Spectral Library from Command Line

#2386 nbollis closed 4 months ago
0
[WIP] Fiddling with alexes pep version

#2385 trishorts closed 4 months ago
0
[WIP]New PEP calculation

#2384 Alexander-Sol closed 4 months ago
0
Kdn adding and diagnostic filtering

#2383 RayMSMS closed 3 months ago
1
Added option to limit the number of identificatiosn per spectrum to the search task

#2382 nbollis closed 5 months ago
0
Asynchronous file loading for search task

#2381 nbollis closed 4 months ago
1
DIA_XIC

#2380 YulingDai opened 5 months ago
0
Meta Draw Quality of Life Updates

#2379 nbollis closed 4 months ago
1
Added some tooltips for the cross link search task view.

#2378 avcarr2 closed 5 months ago
1
Added new features to Top-Down PEP

#2377 nbollis closed 4 months ago
1
new style computation of pep q-value

#2376 trishorts closed 4 months ago
0
Only quantify peptides that clear the q-value threshold

#2375 Alexander-Sol opened 5 months ago
1
Pep bug fix

#2374 Alexander-Sol closed 5 months ago
1
Pep on peptides first

#2373 trishorts closed 5 months ago
1
Stop scrolling of progress bar after calculating spectral angle

#2372 nbollis closed 5 months ago
1
Cross Link Spectrum Match Plot Export Bug Fix

#2371 nbollis closed 5 months ago
1
Spectral Averaging Command Line

#2370 nbollis closed 5 months ago
0
Update to MzLib 1.0.549

#2369 nbollis closed 6 months ago
1
Glyco Results.txt does not have a summary at the top :(

#2368 nbollis opened 6 months ago
0
Add the comment on glyco-searching and the search summary on the result file

#2367 RayMSMS closed 3 months ago
1
Crash - Index was outside the bounds of the array - XLSearchTask

#2366 xLinkKnight opened 6 months ago
0
Added precursor intensity to PSM, peptide proteoform output file

#2365 zhuoxinshi closed 5 months ago
2
Enable users to limit the number of chimeric identifications per spectra

#2364 nbollis closed 6 months ago
1
Ignore

#2363 nbollis closed 6 months ago
0
add q-value to the all quantified peptides output.

#2362 trishorts opened 7 months ago
0
MetaDraw Fragmentation Reanalysis

#2361 nbollis closed 5 months ago
6
added hyperscore calculation to PEP

#2360 trishorts closed 3 months ago
1
Upgrading wixtools from a release candidate version to 5.0.0

#2359 elaboy closed 3 months ago
1
Add q-value output filter for XL Search

#2358 trishorts opened 7 months ago
0
FDR control

#2357 ShadoWyyyy opened 7 months ago
1
Invert q-value

#2355 trishorts closed 7 months ago
1
Shared pep box

#2354 Alexander-Sol closed 9 months ago
1
Shared peptides tic box for lfq

#2353 trishorts closed 9 months ago
1
Added custom protease window in GUI

#2352 zhuoxinshi opened 9 months ago
1
Glyco spectrum library search updates

#2351 trishorts closed 9 months ago
1
Update .NET version in readme

#2350 acesnik closed 9 months ago
0
use mzlib LibrarySpectrum class

#2349 trishorts closed 9 months ago
1
invert q-value take two

#2348 trishorts closed 8 months ago
0
Eliminate PsmCount from PEP calculation

#2347 trishorts closed 8 months ago
1
add to dictionary glymassdic

#2346 RayMSMS opened 9 months ago
1
Add XLMS paper to citations

#2345 acesnik closed 9 months ago
0
Update pep

#2344 trishorts closed 9 months ago
1
Pass dissociation type not autodetect to diss type collection

#2343 trishorts closed 9 months ago
1

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