snakemake snakemake-executor-plugin-googlebatch issues

snakemake / snakemake-executor-plugin-googlebatch

Snakemake executor plugin for Google Batch (under development)

MIT License

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issues

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feat: Add support for customer compute service account

#51 hnawar opened 1 week ago
3
feat: landsat example

#50 vsoch closed 2 months ago
0
chore(main): release 0.4.0

#49 github-actions[bot] closed 2 months ago
1
chore(deps-dev): update black requirement from ^23.9.1 to ^24.4.0

#48 dependabot[bot] opened 2 months ago
1
test: Testing cos again

#47 cademirch closed 2 months ago
6
test: Test cos

#46 cademirch closed 2 months ago
10
getting main snakemake log from batch job

#45 cademirch closed 2 months ago
1
Testing cos

#44 cademirch closed 3 months ago
1
chore(main): release 0.3.3

#43 github-actions[bot] closed 3 months ago
1
Custom Snippets

#42 cademirch opened 3 months ago
1
fix: make get_snakefile return rel path to snakefile (#40)

#41 vsoch closed 3 months ago
0
fix: make get_snakefile return rel path to snakefile

#40 cademirch closed 3 months ago
4
Issues with include

#39 cademirch closed 3 months ago
6
chore(main): release 0.3.2

#38 github-actions[bot] closed 3 months ago
1
fix: ensure we install datrie

#37 vsoch closed 3 months ago
0
"/opt/conda/bin/python: No module named snakemake"

#36 cademirch closed 3 months ago
17
chore(deps-dev): update flake8 requirement from ^6.1.0 to >=6.1,<8.0

#35 dependabot[bot] opened 3 months ago
0
chore(deps-dev): update pytest requirement from ^7.4.2 to >=7.4.2,<9.0.0

#34 dependabot[bot] opened 3 months ago
1
chore(deps-dev): update black requirement from ^23.9.1 to >=23.9.1,<25.0.0

#33 dependabot[bot] closed 2 months ago
1
chore(main): release 0.3.1

#32 github-actions[bot] closed 3 months ago
1
chore(deps): update snakemake-interface-executor-plugins requirement from ^8.1.1 to >=8.1.1,<10.0.0

#31 dependabot[bot] closed 3 months ago
1
fix: update to latest interface

#30 johanneskoester closed 3 months ago
0
test: adding batch-cos

#29 vsoch closed 2 months ago
25
feat: expose network policy interfaces

#28 vsoch closed 4 months ago
0
feat: support for boot disk type, size, and image

#27 vsoch closed 4 months ago
0
feat: add support for Google Batch GPUs

#26 vsoch closed 4 months ago
1
feat: preemption

#25 vsoch closed 5 months ago
6
Issue with gs plugin

#24 vsoch opened 6 months ago
0
chore(main): release 0.3.0

#23 github-actions[bot] closed 4 months ago
1
feat: add simple example with cos

#22 vsoch closed 6 months ago
0
chore(main): release 0.2.0

#21 github-actions[bot] closed 6 months ago
1
feat: add/intel mpi example

#20 vsoch closed 6 months ago
1
chore(main): release 0.1.1

#19 github-actions[bot] closed 6 months ago
1
pi.calc output example is empty

#18 vsoch opened 6 months ago
0
local() file not uploaded to storage

#17 vsoch closed 6 months ago
20
Question by @vsoch: Why can't we use debug logging for executor plugins? I instead need to use info and make it very verbose

#16 johanneskoester opened 7 months ago
3
Future to look into: secret manager

#15 vsoch opened 7 months ago
0
Google Logging API Limit not reasonable for Snakemake

#14 vsoch opened 7 months ago
5
feat: add/googlebatch logging testing

#13 vsoch closed 7 months ago
1
True API tests currently fail

#12 johanneskoester closed 7 months ago
40
chore(main): release 0.1.0

#11 github-actions[bot] closed 7 months ago
1
chore: mocked testing and release process management

#10 johanneskoester closed 7 months ago
12
fix: adapt to interface changes; cleanup unnecessary code (source code upload and deployment is now handled by Snakemake itself)

#9 johanneskoester closed 7 months ago
0
chore: add test dev dependency, ensure that failing tests are properly reported

#8 johanneskoester closed 7 months ago
2
Updated patch-1

#7 vsoch closed 8 months ago
0
Fix test suite usage

#6 johanneskoester closed 8 months ago
5
Deployment of workflow sources

#5 johanneskoester closed 7 months ago
2
Google Storage Plugin for Snakemake

#4 vsoch closed 7 months ago
1
Unable to develop without gs storage plugin and shared fs bug

#3 vsoch closed 7 months ago
6
add support for basic snippets

#2 vsoch closed 8 months ago
0