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snakemake
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snakemake-executor-plugin-googlebatch
Snakemake executor plugin for Google Batch
MIT License
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Job Using googlebatch-container
#54
stasaki
opened
3 months ago
1
chore(main): release 0.5.0
#53
github-actions[bot]
closed
3 months ago
2
feat: Add support for customer compute service account (#51, @hnawar)
#52
johanneskoester
closed
3 months ago
1
feat: Add support for customer compute service account
#51
hnawar
closed
3 months ago
6
feat: landsat example
#50
vsoch
closed
6 months ago
0
chore(main): release 0.4.0
#49
github-actions[bot]
closed
6 months ago
1
chore(deps-dev): update black requirement from ^23.9.1 to ^24.4.0
#48
dependabot[bot]
closed
3 months ago
1
test: Testing cos again
#47
cademirch
closed
7 months ago
6
test: Test cos
#46
cademirch
closed
7 months ago
10
getting main snakemake log from batch job
#45
cademirch
closed
7 months ago
1
Testing cos
#44
cademirch
closed
7 months ago
1
chore(main): release 0.3.3
#43
github-actions[bot]
closed
7 months ago
1
Custom Snippets
#42
cademirch
opened
7 months ago
1
fix: make get_snakefile return rel path to snakefile (#40)
#41
vsoch
closed
7 months ago
0
fix: make get_snakefile return rel path to snakefile
#40
cademirch
closed
7 months ago
4
Issues with include
#39
cademirch
closed
7 months ago
6
chore(main): release 0.3.2
#38
github-actions[bot]
closed
7 months ago
1
fix: ensure we install datrie
#37
vsoch
closed
7 months ago
0
"/opt/conda/bin/python: No module named snakemake"
#36
cademirch
closed
7 months ago
17
chore(deps-dev): update flake8 requirement from ^6.1.0 to >=6.1,<8.0
#35
dependabot[bot]
opened
8 months ago
1
chore(deps-dev): update pytest requirement from ^7.4.2 to >=7.4.2,<9.0.0
#34
dependabot[bot]
opened
8 months ago
1
chore(deps-dev): update black requirement from ^23.9.1 to >=23.9.1,<25.0.0
#33
dependabot[bot]
closed
7 months ago
1
chore(main): release 0.3.1
#32
github-actions[bot]
closed
8 months ago
1
chore(deps): update snakemake-interface-executor-plugins requirement from ^8.1.1 to >=8.1.1,<10.0.0
#31
dependabot[bot]
closed
8 months ago
1
fix: update to latest interface
#30
johanneskoester
closed
8 months ago
0
test: adding batch-cos
#29
vsoch
closed
7 months ago
25
feat: expose network policy interfaces
#28
vsoch
closed
9 months ago
0
feat: support for boot disk type, size, and image
#27
vsoch
closed
9 months ago
0
feat: add support for Google Batch GPUs
#26
vsoch
closed
9 months ago
1
feat: preemption
#25
vsoch
closed
10 months ago
6
Issue with gs plugin
#24
vsoch
opened
10 months ago
0
chore(main): release 0.3.0
#23
github-actions[bot]
closed
9 months ago
1
feat: add simple example with cos
#22
vsoch
closed
10 months ago
0
chore(main): release 0.2.0
#21
github-actions[bot]
closed
11 months ago
1
feat: add/intel mpi example
#20
vsoch
closed
11 months ago
1
chore(main): release 0.1.1
#19
github-actions[bot]
closed
11 months ago
1
pi.calc output example is empty
#18
vsoch
opened
11 months ago
0
local() file not uploaded to storage
#17
vsoch
closed
11 months ago
20
Question by @vsoch: Why can't we use debug logging for executor plugins? I instead need to use info and make it very verbose
#16
johanneskoester
opened
11 months ago
3
Future to look into: secret manager
#15
vsoch
opened
11 months ago
0
Google Logging API Limit not reasonable for Snakemake
#14
vsoch
opened
1 year ago
5
feat: add/googlebatch logging testing
#13
vsoch
closed
11 months ago
1
True API tests currently fail
#12
johanneskoester
closed
11 months ago
40
chore(main): release 0.1.0
#11
github-actions[bot]
closed
11 months ago
1
chore: mocked testing and release process management
#10
johanneskoester
closed
1 year ago
12
fix: adapt to interface changes; cleanup unnecessary code (source code upload and deployment is now handled by Snakemake itself)
#9
johanneskoester
closed
1 year ago
0
chore: add test dev dependency, ensure that failing tests are properly reported
#8
johanneskoester
closed
1 year ago
2
Updated patch-1
#7
vsoch
closed
1 year ago
0
Fix test suite usage
#6
johanneskoester
closed
1 year ago
5
Deployment of workflow sources
#5
johanneskoester
closed
1 year ago
2
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