snakemake snakemake-executor-plugin-slurm issues

snakemake / snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster

MIT License

18 stars 19 forks source link

issues

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Respect GPU resource specifications

#172 vadim0x60 opened 1 day ago
2
Define job groups in cluster config.yaml

#171 freekvh closed 1 week ago
1
chore(main): release 0.12.0

#170 github-actions[bot] closed 2 weeks ago
1
chore(main): release 0.12.0

#169 github-actions[bot] closed 2 weeks ago
1
docs: fix headings in further.md

#168 johanneskoester closed 2 weeks ago
2
chore(main): release 0.11.2

#167 github-actions[bot] closed 2 weeks ago
2
feat: experimenting with automated release post to Mastodon

#166 cmeesters closed 2 weeks ago
2
fix: sbatch stderr parsing #2

#165 cmeesters closed 2 weeks ago
8
sacctmgr error when running in job context

#164 jprnz opened 2 weeks ago
1
chore(main): release 0.11.2

#163 github-actions[bot] closed 2 weeks ago
2
Localrules are ignored for grouped jobs

#162 NoahHenrikKleinschmidt opened 2 weeks ago
1
fix: sbatch stderr parsing

#161 cmeesters closed 2 weeks ago
4
chore(main): release 0.11.1

#160 github-actions[bot] closed 1 month ago
1
feat: custom log file behaviour

#159 cmeesters opened 1 month ago
2
support for slurm job arrays?

#158 andrewkern closed 1 month ago
2
Slurm workslow submits intial jobs but then hangs until ctrl-c

#157 freekvh closed 2 weeks ago
26
Allow simultaneous use of envmodules and conda environment

#156 gatoniel opened 1 month ago
3
Change jobnames to be meaningful

#155 iamh2o closed 1 month ago
1
slurm job name could be more informative

#154 dgordon562 closed 4 weeks ago
10
docs: requeue

#153 cmeesters closed 1 month ago
3
chore(main): release 0.11.0

#152 github-actions[bot] closed 1 month ago
2
--software-deployment-method argument has a different behaviour using CLI and profiles

#151 ArthurDondi opened 2 months ago
1
Getting an AttributeError: module 'pulp' has no attribute 'list_solvers'. Did you mean: 'listSolvers'?

#150 Pooshman closed 2 months ago
1
chore(main): release 0.10.2

#149 github-actions[bot] closed 2 months ago
2
fix: added forgotten yield in case of job preemption

#148 cmeesters closed 2 months ago
1
Add seff support to evaluate resource allocation after executation

#147 sreichl opened 2 months ago
2
Snakemake fails to parse sbatch output to get slurm_jobid

#146 kennethabarr opened 2 months ago
3
threads directive of a rule not taken into account

#145 ArthurDondi opened 2 months ago
5
chore(main): release 0.10.1

#144 github-actions[bot] closed 2 months ago
2
chore: test changes in testing framework in main branch of snakemake

#143 johanneskoester closed 2 months ago
2
chore: update to stable snakemake

#142 johanneskoester closed 2 months ago
7
`threads` directive of a rule not taken into account when running through slurm

#141 blaiseli opened 2 months ago
3
fix: logfile quoting and scancel error handling

#140 johanneskoester closed 2 months ago
7
feat: cancel workflow#127

#139 cmeesters closed 1 month ago
4
chore(main): release 0.10.0

#138 github-actions[bot] closed 3 months ago
2
feat: in job stability

#137 cmeesters closed 3 months ago
6
feat: added requeue option to client

#136 slaube-jgu closed 1 month ago
5
chore(main): release 0.9.1

#135 github-actions[bot] closed 3 months ago
1
Job submission with --prioritize runs all at once, then stalls

#134 KB1RD opened 3 months ago
4
snakemake exit with MissingOutputException when using --immediate-submit

#133 sirintra opened 3 months ago
3
fix: issue #109 - preemption is no longer considered a failed status

#132 cmeesters closed 3 months ago
1
chore(main): release 0.9.1

#131 github-actions[bot] closed 3 months ago
0
Update issue templates

#130 cmeesters closed 3 months ago
0
chore(main): release 0.9.1

#129 github-actions[bot] closed 3 months ago
0
Update issue templates

#128 cmeesters closed 3 months ago
0
job submitted in login node not being cancelled if all rules fail?

#127 ifariasg opened 3 months ago
15
chore(main): release 0.9.1

#126 github-actions[bot] closed 3 months ago
0
fix: add --parsable to sbatch call for a more robust output parsing

#125 nigiord closed 3 months ago
3
chore(main): release 0.9.0

#124 github-actions[bot] closed 3 months ago
1
Way to make logging go to same logs as when running locally?

#123 hermidalc opened 3 months ago
3