snayfach MAGpurify issues

snayfach / MAGpurify

Improvement of metagenome-assembled genomes

GNU General Public License v3.0

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issues

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Interpretation of cutoff values

#25 donovan-h-parks opened 1 year ago
2
too many bam files

#24 dmneedha opened 1 year ago
0
lastal: not found

#23 snayfach opened 1 year ago
0
Issue with building my reference database for conspecific module

#22 djung0928 opened 1 year ago
0
phylo-markers: no output file found...

#21 TKsh6 opened 2 years ago
0
Analysis automation

#20 Philippemetagenomica opened 2 years ago
2
Error running phylo-markers

#19 jtamames opened 2 years ago
0
Adding another genome to known-contam?

#18 michoug opened 2 years ago
0
Suggestions based on trial use

#17 jdwinkler-lanzatech opened 3 years ago
1
tetra-freq unable to handle "N" nucleotide

#16 mmp3 opened 4 years ago
1
Question about --weighted-means and % bin removed

#15 brymerr921 opened 4 years ago
0
"lastal: can't open file: -P" When running "clade-markers"

#14 hqvuong closed 1 year ago
4
Add SNP density module

#13 snayfach closed 1 year ago
0
Conspecific module

#12 snayfach closed 1 year ago
0
Add FPR cutoffs to modules

#11 snayfach closed 1 year ago
0
Add coverage module

#10 apcamargo closed 4 years ago
3
Fix TNF counting bug

#9 apcamargo closed 4 years ago
0
Convert code to Python 3 and minor improvements

#8 apcamargo closed 4 years ago
0
No module named 'utility'

#7 SilasK closed 4 years ago
1
SyntaxError: Missing parentheses in call to 'print'. Did you mean print("\n## Computing mean genome-wide GC content")?

#6 SilasK closed 4 years ago
1
Conda package

#5 SilasK closed 4 years ago
1
add flag for max % of bin removed

#4 snayfach closed 1 year ago
0
better instructions for downloaded and unpacking database

#3 snayfach closed 1 year ago
0
Integrate mash with run_qc.py conspecific

#2 snayfach closed 1 year ago
0
add arguments allowing selecting which modules to use for contamintion removal

#1 snayfach closed 1 year ago
0