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superphy
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spfy
Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses
https://lfz.corefacility.ca/superphy/grouch/
Apache License 2.0
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MERGE: Phylotyper
#226
kevinkle
closed
7 years ago
0
error when headers are `>NODE_2_length_339420_cov_157.209`
#225
kevinkle
closed
7 years ago
10
Integration of Panseq
#224
kevinkle
closed
7 years ago
0
Serotype and VF results cannot be separated
#223
mwhitesi
closed
6 years ago
3
MERGE: fix id problem with enterobase script
#222
kevinkle
closed
7 years ago
0
Refactoring upload to support collection of meta-data
#221
mwhitesi
opened
7 years ago
1
allow lookup of past results based on filename
#220
kevinkle
opened
7 years ago
3
Merge PanPredic into a RC first.
#219
kevinkle
closed
7 years ago
0
add all metadata in enterobase to blazegraph
#218
kevinkle
closed
7 years ago
5
use a superclass :groupable to indicate which types should be used for group comparisons
#217
kevinkle
opened
7 years ago
0
Pan
#216
kevinkle
closed
7 years ago
2
ADD: on nginx
#215
kevinkle
closed
7 years ago
0
Easy way to run multiple worker containers
#214
kevinkle
closed
7 years ago
1
Create a way to log runtimes of rq jobs
#213
kevinkle
closed
6 years ago
2
Enterobase
#212
kevinkle
closed
7 years ago
0
MEREGE: script to dl all ecoli genomes from enterobase
#211
kevinkle
closed
7 years ago
0
Write script to download assembles from Enterobase w/o an API key
#210
kevinkle
closed
7 years ago
4
Docs deployment
#209
kevinkle
closed
7 years ago
0
Genome Quality Control
#208
jamez-eh
opened
7 years ago
0
Docs deployment
#207
kevinkle
closed
7 years ago
0
Hashing problem
#206
jamez-eh
opened
7 years ago
0
Permanently define parameters for analysis modules
#205
kevinkle
opened
7 years ago
0
Check blazegraph and pull results if an old file/analysis pair was already run
#204
kevinkle
opened
7 years ago
0
See how new coop projects integrate into Spfy
#203
kevinkle
closed
7 years ago
1
Integration of Phylotyper
#202
kevinkle
closed
7 years ago
2
Integration of Panseq
#201
kevinkle
closed
7 years ago
14
bump up the priority for quality control
#200
kevinkle
opened
7 years ago
0
CHANGE: have group comparisons run on the priority
#199
kevinkle
closed
7 years ago
0
MERGE: Script to sideload genomes w/o reactapp
#198
kevinkle
closed
7 years ago
0
script to load files into subtyping jobs w/o reactapp
#197
kevinkle
closed
7 years ago
10
MERGE: script to generate fake genome files
#196
kevinkle
closed
7 years ago
0
"analyze this" module
#195
kevinkle
closed
7 years ago
1
FIX: eaeA in ectyper
#194
kevinkle
closed
7 years ago
0
show which position you task is in the queue
#193
kevinkle
opened
7 years ago
0
relook at rdfs terms for linking objects
#192
kevinkle
closed
6 years ago
2
UPDATE: ectyper shortnames
#191
kevinkle
closed
7 years ago
0
MERGE: basic support for metadata upload as .csv
#190
kevinkle
closed
7 years ago
0
address difference between faldo:Position and faldo:position
#189
kevinkle
closed
7 years ago
1
new approach to uploading files
#188
kevinkle
opened
7 years ago
1
blazegraph struggles under load
#187
kevinkle
closed
6 years ago
31
FIX: del psutil
#186
kevinkle
closed
7 years ago
0
Fix 159 uwsgi timeout
#185
kevinkle
closed
7 years ago
0
FIX?: bump up uwsgi worker timeout to 2 hours
#184
kevinkle
closed
7 years ago
0
create docs about setting up for production
#183
kevinkle
closed
7 years ago
1
FIX: "log_format" directive is not allowed here in /etc/nginx/conf.d/…
#182
kevinkle
closed
7 years ago
0
Fix 159 uwsgi timeout
#181
kevinkle
closed
7 years ago
0
create a service to run blazegraph on corefacility
#180
kevinkle
closed
7 years ago
2
DEL: one less print
#179
kevinkle
closed
7 years ago
0
Fix 159 uwsgi timeout
#178
kevinkle
closed
7 years ago
0
Fix 159 uwsgi timeout
#177
kevinkle
closed
7 years ago
0
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