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tgen
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vcfMerger2
Dynamic vcfMerger for 2 to N somatic variants vcf files
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Adding support new tools dragen and bugfix for phaser processing
#29
bryce-turner
closed
1 year ago
0
Suggestion: allow users to add phASER as a path
#28
bozbezbozzel
opened
1 year ago
1
Introduce an ELSE statement to deal with edge cases
#27
ChristopheLegendre
closed
1 year ago
3
typo or wrong annotation
#26
ChristopheLegendre
closed
1 year ago
2
Cleanup dev files
#25
bryce-turner
closed
2 years ago
1
Strelka debug recompose blocks - pop[0] Error
#24
ChristopheLegendre
closed
2 years ago
0
Octopus update preprocessing
#23
ChristopheLegendre
closed
2 years ago
3
VCF validation issues with VarDict, Mutect2, and Octopus fields
#22
denriquez
closed
3 years ago
3
vcfMerger could use Pisces module
#21
sfacista
closed
2 years ago
4
Strelka2 prep BlockSub creation failing in complex tandem blocksub
#20
PedalheadPHX
closed
4 years ago
1
Number of Genotype exceeds 3 in octopus
#19
ChristopheLegendre
closed
4 years ago
1
TYPE is a key word for bcftools variant type and should be renamed VTYPE
#18
ChristopheLegendre
closed
4 years ago
4
Octopus AD value are single number separated by commas.
#17
ChristopheLegendre
closed
4 years ago
1
Octopus AR precision
#16
PedalheadPHX
closed
4 years ago
1
lancet issue when vcf NOT filtered by PASS
#15
ChristopheLegendre
closed
4 years ago
1
Same Phase but Non Consecutive Variants got collapsed
#14
ChristopheLegendre
closed
4 years ago
1
ERROR: You must provide the Tumor BAM files to the option --lbams ; Aborting.
#13
awchrist
closed
5 years ago
2
Develop gn - Merge with Master Branch
#12
ChristopheLegendre
closed
5 years ago
0
changing directory within your script might limit the ability of using relative paths as input.
#11
awchrist
closed
5 years ago
1
Vm2 with slk phasing
#10
ChristopheLegendre
closed
5 years ago
0
Wrong Terminology
#9
PedalheadPHX
closed
5 years ago
1
sorting contigs same way in header and data
#8
ChristopheLegendre
closed
5 years ago
3
Go Public
#7
ChristopheLegendre
closed
5 years ago
0
Try Develop Branch merge into Master
#6
ChristopheLegendre
closed
5 years ago
1
modify title in Venn image
#5
ChristopheLegendre
closed
5 years ago
1
Devel into Master --> Request Merging
#4
ChristopheLegendre
closed
5 years ago
0
Filtering Occuring?
#3
PedalheadPHX
closed
5 years ago
4
Duplicate contig lines in merged header
#2
PedalheadPHX
closed
5 years ago
2
Main script cannot be executable without a shebang
#1
ryanrichholt
closed
5 years ago
1