thibautjombart apex issues

thibautjombart / apex

Phylogenetic Methods for Multiple Gene Data

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issues

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Trouble creating geneind object using multidna2genind

#51 gustavo-miranda opened 4 years ago
0
fix error in add.gaps if phyDat contains not nucleotides sequences

#50 KlausVigo closed 7 years ago
2
Reading fasta files containing amino acid sequences

#49 mprous1 closed 7 years ago
3
Trouble exporting multidna object as fasta file...

#48 Wesleyhattingh opened 8 years ago
1
Update DESCRIPTION

#47 zkamvar closed 8 years ago
0
CRAN release

#46 EricArcher closed 8 years ago
7
Update README to address UX

#45 zkamvar closed 8 years ago
1
apex vignette: move importing data before object classes

#44 zkamvar closed 8 years ago
3
Utilize basename instead of sapply

#43 zkamvar closed 8 years ago
1
will need soon multi.AAbin object

#42 KlausVigo opened 8 years ago
1
locusNames accessor

#41 EricArcher closed 8 years ago
1
gap.only vs. exclude.gap.only arguments in accessors

#40 EricArcher closed 8 years ago
1
replacing @dna by @seq in read.multiphyDat

#39 KlausVigo closed 8 years ago
3
Current version (1.0.1) release to CRAN?

#38 EricArcher closed 8 years ago
1
apex needs phangorn release

#37 thibautjombart closed 9 years ago
6
Document accessors in vignette

#36 thibautjombart closed 8 years ago
3
Bug reported by CRAN

#35 thibautjombart closed 9 years ago
0
had accessors.Rd file written

#34 EricArcher closed 8 years ago
7
Author list addition

#33 EricArcher closed 8 years ago
0
Accessors for multidna objects

#32 EricArcher closed 9 years ago
2
Create and use accessors

#31 thibautjombart closed 9 years ago
10
Document add.gaps / rm.gaps

#30 thibautjombart opened 9 years ago
0
Add rm.gaps

#29 thibautjombart closed 9 years ago
1
Add add.gaps function for multiphyDat

#28 thibautjombart closed 9 years ago
2
Add [ operator for multiphyDat

#27 thibautjombart closed 9 years ago
1
Add type of data stored in multiphyDat

#26 thibautjombart closed 9 years ago
5
export to seqinr format

#25 thibautjombart closed 9 years ago
6
Adapt functions to optional gap-only sequences

#24 thibautjombart closed 9 years ago
1
Make gap-only sequences optional in constructors

#23 thibautjombart closed 9 years ago
2
create function to add gap-only sequences

#22 thibautjombart closed 9 years ago
1
Data structure - missing sequences

#21 thibautjombart closed 9 years ago
4
Add 'as' methods for our classes

#20 thibautjombart closed 9 years ago
1
Rationalise the classes

#19 thibautjombart closed 9 years ago
2
Add show method for multiphyDat

#18 thibautjombart closed 9 years ago
1
Add n.seq.miss to multiphyDat

#17 thibautjombart closed 9 years ago
3
Write manuscript

#16 thibautjombart closed 8 years ago
4
Five more spaces

#15 yihui closed 9 years ago
1
Polish vignette.

#14 thibautjombart closed 9 years ago
0
Ignore empty sequences in s.seq

#13 thibautjombart closed 9 years ago
0
Expand arguments for multiphyDat2genind

#12 thibautjombart closed 9 years ago
0
Release on CRAN!

#11 thibautjombart closed 9 years ago
2
make a function to get simple trees from multidna

#10 thibautjombart closed 9 years ago
1
Fix bug in multidna2genind and add test architecture

#9 zkamvar closed 9 years ago
1
Ready for the first release?

#8 thibautjombart closed 9 years ago
17
Naming convention

#7 KlausVigo closed 9 years ago
1
Make markdown vignette

#6 thibautjombart closed 9 years ago
6
Example initialize,multiphyDat-method fails

#5 thibautjombart closed 9 years ago
5
NOTE to fix

#4 thibautjombart closed 9 years ago
1
Add extra arguments to further address #2

#3 zkamvar closed 9 years ago
4
Add translator from multidna to genind

#2 zkamvar closed 9 years ago
4