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uclahs-cds
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project-method-AlgorithmEvaluation-BNCH-000082-SRCRNDSeed
GNU General Public License v2.0
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Upgrade to latest static analysis Action
#116
nwiltsie
opened
2 months ago
0
Update subclone_relative_seed_variability.R
#115
philippaSteinberg
closed
5 months ago
0
Update plot_num_subclones_box.R
#114
philippaSteinberg
closed
6 months ago
2
Autofix broken Confluence links
#113
nwiltsie
closed
6 months ago
0
Apply shellcheck fixes
#112
nwiltsie
closed
6 months ago
1
Replace templated text in README
#111
nwiltsie
opened
9 months ago
0
Update sd and for p.adjust
#110
philippaSteinberg
closed
10 months ago
0
Update CI/CD image
#109
nwiltsie
closed
10 months ago
0
Update CHANGELOG.md
#108
philippaSteinberg
closed
11 months ago
1
Add code for results stats
#107
philippaSteinberg
closed
11 months ago
0
Update README.md
#106
philsteinberg
closed
12 months ago
0
Phils fix plotting for figures
#105
philsteinberg
closed
12 months ago
1
Add SomaticSniper-Battenberg-PhyloWGS-sr submission script
#104
philsteinberg
closed
1 year ago
0
Phils add parse phylowgs subclones
#103
philsteinberg
closed
1 year ago
8
Phils add plot subclones box
#102
philsteinberg
closed
1 year ago
3
Number of subclones boxplots
#101
philsteinberg
closed
1 year ago
0
Plot seed variability
#100
philsteinberg
closed
1 year ago
3
Relative seed variability plot
#99
philsteinberg
closed
1 year ago
1
Add Strelka-Batennberg-phyloWGS-sr submission script
#98
philsteinberg
closed
1 year ago
1
Battenberg Analysis
#97
philsteinberg
closed
12 months ago
4
Add Mutect2 Battenberg PhyloWGS sr submission script
#96
philsteinberg
closed
1 year ago
0
PhyloWGS seed + sample combinations that failed due to 100% multiprimary trees
#95
philsteinberg
closed
1 year ago
1
Mutect2 + Battenberg + PhyloWGS sr mode Error
#94
philsteinberg
closed
1 year ago
9
Understand R script for parsing PhyloWGS output + Interprete PhyloWGS output
#93
philsteinberg
closed
1 year ago
1
Visualize PhyloWGS output as tree
#92
philsteinberg
closed
1 year ago
3
Add SomaticSniper-Battenberg-PyClone-VI-MR submission script
#91
philsteinberg
closed
1 year ago
0
Launch SomaticSniper + Battenberg + PyClone-VI seeds [HNSC multi-region]
#90
philsteinberg
closed
1 year ago
0
Phils launch mutect2 battenberg pyclone vi mr
#89
philsteinberg
closed
1 year ago
0
Launch Mutect2 + Battenberg + PyClone-VI seeds [HNSC multi-region]
#88
philsteinberg
closed
1 year ago
0
Add Mutect2-Battenberg-Pyclone-VI-SR submission script
#87
philsteinberg
closed
1 year ago
0
Mutect2-Battenberg-DPClust mulit-region mode ERROR
#86
philsteinberg
closed
1 year ago
0
SomaticSniper-Battenberg-DPClust multi-region mode ERROR
#85
philsteinberg
closed
1 year ago
0
Strelka2-Battenberg-DPClust mulit-region mode ERROR
#84
philsteinberg
closed
1 year ago
3
Launch Mutect2 + Battenberg + DPClust seeds [HNSC multi-region]
#83
philsteinberg
opened
1 year ago
0
Add Strelka2-Battenberg-PyClone-VI-MR submission script
#82
philsteinberg
closed
1 year ago
0
Launch sSNV-caller + sCNA-caller + src-tool seeds [HNSC multi-region mode]
#81
philsteinberg
opened
1 year ago
0
Launch Strelka2 + Battenberg + PyClone-VI seeds [HNSC multi-region]
#80
philsteinberg
closed
1 year ago
0
Add Mutect2-Battenberg-DPClust-SR submission script
#79
philsteinberg
closed
1 year ago
0
Add SomaticSniper-Battenberg-DPClust-SR submission script
#78
philsteinberg
closed
1 year ago
1
Phils launch somaticsniper battenberg pyclone vi
#77
philsteinberg
closed
1 year ago
1
Add new submission script
#76
philsteinberg
closed
1 year ago
0
Launch sSNV-caller + sCNA-caller + src-tool seeds [HNSC single-region mode]
#75
philsteinberg
closed
1 year ago
0
Launch Mutect2 + Battenberg + PhyloWGS seeds [HNSC single-region]
#74
philsteinberg
closed
1 year ago
3
Launch Mutect2 + Battenberg + PyClone-VI seeds [HNSC single-region]
#73
philsteinberg
closed
1 year ago
0
Launch Strelka2 + Battenberg + PyClone-VI seeds [HNSC single-region]
#72
philsteinberg
closed
1 year ago
1
Phils update readme
#71
philsteinberg
closed
1 year ago
2
Phils launch strelka2 battenberg dpclust sr
#70
philsteinberg
closed
1 year ago
1
Launch Strelka2 + Battenberg + DPClust seeds [HNSC single-region]
#69
philsteinberg
closed
1 year ago
1
Launch SomaticSniper + Battenberg + DPClust seeds [HNSC multi-region]
#68
philsteinberg
opened
1 year ago
0
Launch Mutect2 + Battenberg + DPClust seeds [HNSC single-region]
#67
philsteinberg
closed
1 year ago
1
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