vandermeerlab HD-system-brainstem issues

vandermeerlab / HD-system-brainstem

Code for analyzing data from recordings in mouse brainstem head direction circuit.

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issues

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Plot examples of eyeblinks and any other behavioral variables (wheel speed?)

#33 stottbot opened 3 months ago
0
calculate conversion factor k and add to the three example sessions for Chenhao so that he can start the analysis pipeline

#32 stottbot opened 4 months ago
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Investigate cerebellum to DTN connection

#31 stottbot opened 5 months ago
1
Draft my NIH biosketch

#30 stottbot opened 5 months ago
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Quantify cell counts

#29 stottbot opened 5 months ago
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Look for cerebellum labeling in existing histology

#28 stottbot opened 5 months ago
1
Taube data

#27 stottbot opened 5 months ago
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Write scientific statement for Hitchcock LOI and get feedback.

#26 stottbot opened 6 months ago
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Go through all recording sessions & calculate a new set up putative saccade times w/ a lower threshold for aggressive saccade detection (for slow phase analysis)

#25 stottbot opened 6 months ago
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Go through all recording sessions & make AHV/EV fits in order to calculate conversion factor to degrees. Store in each ExpKeys file.

#24 stottbot opened 6 months ago
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Write script for neuron selection criteria

#23 stottbot opened 6 months ago
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Calculate proportion of Type I/II NPH cells.

#22 stottbot opened 6 months ago
2
Craniotomy on M492

#21 stottbot opened 6 months ago
0
Headbar surgery on M464

#20 stottbot opened 6 months ago
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Test out megalens

#19 stottbot opened 6 months ago
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Do test session w/ rotating platform to make sure that everything is working.

#18 stottbot opened 6 months ago
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M463 histology

#17 stottbot opened 6 months ago
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FINISH HISTOLOGY MAP - see spreadsheet

#16 stottbot opened 6 months ago
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FINISH EXPKEYS - see spreadsheet

#15 stottbot opened 6 months ago
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Confer w/ Kathy about units for pupil position.

#14 stottbot opened 6 months ago
1
Suggested edits before sharing with Kechen

#13 mvdm opened 1 year ago
1
Sort tuning curves by max firing rate.

#12 stottbot opened 2 years ago
0
Plot lots of saccade PETHs and figure out the latency to fire and see if some cells fire for saccades in both directions or only one direction.

#11 stottbot opened 2 years ago
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Finish code to segment data by + and - AHV values.

#10 stottbot opened 2 years ago
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Regression analyses on tuning curve data (either side of zero degrees).

#9 stottbot opened 2 years ago
1
Adding some kind of errorbar type thing to tuning curves.

#8 stottbot opened 2 years ago
0
Create a eye movement viewer GUI that has the pupil position traces alongside the actual video, for the purpose of quality control.

#7 stottbot opened 2 years ago
0
Write code to manually identify horizontal and vertical eye axes. For the purpose of (1) re-centering the axes (when needed) and to get pupil position into units of eye width. May have to use deeplabcut for the first item if I need those points at every time step.

#6 stottbot opened 2 years ago
1
some kind of method for generating expected AHV tuning curve from saccade activity (like a kernal GLM)

#5 stottbot opened 2 years ago
2
option for processPupilData2() to suppress plotting

#4 mvdm opened 3 years ago
2
significance testing for saccade peths

#3 stottbot opened 3 years ago
0
significance testing for tuning curves

#2 stottbot opened 3 years ago
1