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vastgroup
/
vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.
MIT License
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combine error with --IR_version 1
#72
UBrau
closed
5 years ago
0
to_combine: zero inclusion/exclusion reads error
#71
araposo
closed
5 years ago
13
VastDB library for Drosophila melanogaster (dm6)
#70
kennyrebelo
closed
6 years ago
1
Output of vast-tools diff
#69
BaluPai
closed
6 years ago
16
merge problem
#68
briankalish
closed
5 years ago
1
align issue
#67
briankalish
closed
5 years ago
4
Align problem
#66
danieleottaviani
closed
6 years ago
3
Perl 5.26.1 error
#65
toniher
closed
5 years ago
1
How to call vast-tools align with Dre
#64
alicezyj1
closed
6 years ago
1
A bunch of questions
#63
ZheFrench
closed
6 years ago
13
Question about stranded RNA-seq data
#62
bontus
closed
7 years ago
5
question baout trimming step.
#61
ghost
closed
6 years ago
2
diff paired error
#60
rhugh-white
closed
6 years ago
0
question about usage of --min_range
#59
ZheFrench
closed
6 years ago
5
Is there a hg38 version VastDB ?
#58
ZheFrench
closed
7 years ago
5
diff --help not working
#57
UBrau
closed
7 years ago
0
Bump version number to 1.2.0
#56
nuno-agostinho
closed
6 years ago
0
Sample IDs with Paired End Reads and cRPKM calculations
#55
evanfloden
closed
8 years ago
2
Problems w/ vast-tools diff
#54
nunolbmorais
closed
8 years ago
2
[vast align error]: rm -50.fa.gz Failed in RunDBS_1.pl!
#53
fenguita
closed
6 years ago
5
GRCh38 and Uniquely Mapped Reads
#52
argrosso
closed
8 years ago
3
Folders with spaces are problematic
#51
nuno-agostinho
closed
6 years ago
1
Template files in VASTDB cannot be uncompressed
#50
nuno-agostinho
closed
8 years ago
1
IR_MakeTablePIR.R gets option for version 1 or 2
#49
UBrau
closed
8 years ago
0
paired analysis - samples with NULL replicates
#48
josegarciamanteiga
closed
4 years ago
0
question about events with min read coverage
#47
Rahel14350
closed
6 years ago
0
Calcaulating the overall PSI value between samples
#46
Rahel14350
closed
8 years ago
3
question about Trimming step in the vast-tools align
#45
Rahel14350
closed
9 years ago
1
questions about vast-tools align and diff
#44
Rahel14350
closed
8 years ago
1
Vast-tools and diff starting with BAM files
#43
Rahel14350
closed
9 years ago
4
Analysis never ends
#42
attakata
closed
9 years ago
3
Differences in IR events listed in output
#41
UBrau
closed
8 years ago
5
3'-bias file open error
#40
UBrau
closed
9 years ago
4
writeLines doesn't work inside mclapply when ncores > 1
#39
lpantano
closed
9 years ago
2
psiplotter to scale output for sample number
#38
timbitz
closed
9 years ago
1
Combine error when using --exprONLY
#37
kcha
closed
9 years ago
0
Remove .IR.summary.txt files
#36
UBrau
closed
9 years ago
0
install.R location of VASTDB
#35
UBrau
closed
9 years ago
0
Integrate psiplot R package to "vast-tools plot"
#34
kcha
closed
9 years ago
1
Error in vast-tools diff
#33
mirimia
closed
9 years ago
7
Use of uninitialized value $newOrder in Add_to_FULL.pl
#32
mirimia
closed
9 years ago
5
README doubt
#31
mirimia
closed
9 years ago
3
psiplotter.R: legend is of length 0 error
#30
kcha
closed
9 years ago
0
PSI=0 when 0 reads
#29
mirimia
closed
9 years ago
6
Error in trimming
#28
mirimia
closed
10 years ago
4
Error in vast-tools diff [if (all(totalFirst < (opt$minReads + opt$alpha + opt$beta)]
#27
mirimia
closed
10 years ago
7
Error in vast-tools diff (cannot open PDF file)
#26
mirimia
closed
10 years ago
2
plot: "subscript out of bounds"
#25
funnell
closed
10 years ago
1
Sample names cut off in diff plots
#24
funnell
closed
10 years ago
1
Compilation error in RunDBS_1.pl
#23
mirimia
closed
10 years ago
0
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