vgteam libhandlegraph issues

vgteam / libhandlegraph

Library for the Handle Graph abstraction

MIT License

21 stars 5 forks source link

issues

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Add a batch path destroy function with a default implementation

#98 jeizenga closed 3 months ago
0
Change to PanSN "scaffolds" with colon and dash coordinate ranges

#97 adamnovak opened 6 months ago
0
Qualify std::move calls to avoid new warning

#96 adamnovak closed 1 year ago
0
Install a CMake config to enable find_package(libhandlegraph)

#95 adamnovak closed 1 year ago
1
Handle full parsing of two-part path names

#94 adamnovak closed 1 year ago
0
Position of path step relative to the supporting node

#93 cgroza closed 1 year ago
1
undefined reference to `handlegraph::algorithms::dijkstra(handlegraph::HandleGraph const*, handlegraph::handle_t, std::function<bool (handlegraph::handle_t const&, unsigned long)>, bool)'

#92 cgroza opened 1 year ago
2
Stop parsing `ARS_UCD12#hap0#6` as PanSN

#91 adamnovak closed 1 year ago
0
enable GCC v13.1 compilation

#90 subwaystation closed 1 year ago
1
Add a `dagify_from` algorithm

#89 adamnovak closed 1 year ago
0
add missing else to parse_path_name()

#88 glennhickey closed 1 year ago
0
Add more modes to Dijkstra search

#87 adamnovak closed 1 year ago
0
Distance traceback

#86 xchang1 closed 2 years ago
0
Makefile:127: recipe for target 'all' failed

#85 8banzhuan closed 2 years ago
3
Revise Path Metadata API

#84 adamnovak closed 2 years ago
0
Fix the bug I just made in count walks

#83 jeizenga closed 2 years ago
0
Fix a bug in the overflow detection in count_walks

#82 jeizenga closed 2 years ago
0
Break out more entry points for path copy algorithm

#81 adamnovak closed 2 years ago
1
Path metadata API

#80 adamnovak closed 2 years ago
0
Haplotype interface

#75 glennhickey closed 2 years ago
15
Allow tracking nodes through chop

#74 adamnovak closed 2 years ago
0
Add NamedNodeBackTranslation and refactor BoolReturningWrapper

#73 adamnovak closed 2 years ago
0
Hash the net handle values in a way that compiles

#72 adamnovak closed 2 years ago
0
Hash net_handle_t values instead of addresses

#71 adamnovak closed 2 years ago
0
Const serialize

#70 adamnovak closed 3 years ago
0
Fix bug in unchop

#69 jeizenga closed 3 years ago
0
De-finalize TriviallySerializable

#68 adamnovak closed 3 years ago
0
Snarls and distance

#67 xchang1 closed 3 years ago
0
port over odgi's order-preserving chop

#66 jeizenga closed 3 years ago
0
Add missing #includes

#65 jltsiren closed 3 years ago
0
Migrate useful algorithm over from VG

#64 jeizenga closed 3 years ago
0
Rip out the fiddly mmap code for libbdsg to own

#63 adamnovak closed 3 years ago
0
Split source into multiple CPP files, and add SnarlDecomposition and TriviallySerializable

#62 adamnovak closed 3 years ago
0
Add a default implementation for handle get_step_count method

#61 jeizenga closed 3 years ago
0
Add a truncate method with a default implementation to DeletableHandleGraph interface

#60 jeizenga closed 3 years ago
0
Make usable from libbdsg for libbdsg Pip installation

#59 adamnovak closed 4 years ago
0
allow getting the step count of a handle

#58 ekg closed 4 years ago
0
making RankedHandleGraph part of the default HandleGraph implementation

#57 ekg opened 4 years ago
0
breaking paths and using extents to maintain contiguity

#56 ekg opened 4 years ago
0
add specialization of increment_node_ids for long

#55 ekg closed 4 years ago
0
undefined reference to `increment_node_ids(long)`

#54 ekg closed 4 years ago
0
Change rewrite_segment semantics to match what libbdsg and vg implement

#53 adamnovak closed 4 years ago
1
node naming interface

#52 ekg opened 4 years ago
0
allow multigraphs

#51 ekg opened 4 years ago
0
Add RankedHandleGraph with just a node/handle ordering

#50 adamnovak closed 4 years ago
0
Add node ranks to vectorizable interface

#49 glennhickey closed 4 years ago
0
Tighten semantics

#48 adamnovak closed 4 years ago
0
Make for_each_step_in_path return true when done

#47 adamnovak closed 4 years ago
0
Set up absolute install_name for Mac

#46 adamnovak closed 4 years ago
0
Allow for portable and useful Python bindings

#45 adamnovak closed 4 years ago
0