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vgteam
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libhandlegraph
Library for the Handle Graph abstraction
MIT License
20
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Add a batch path destroy function with a default implementation
#98
jeizenga
closed
1 month ago
0
Change to PanSN "scaffolds" with colon and dash coordinate ranges
#97
adamnovak
opened
4 months ago
0
Qualify std::move calls to avoid new warning
#96
adamnovak
closed
10 months ago
0
Install a CMake config to enable find_package(libhandlegraph)
#95
adamnovak
closed
10 months ago
1
Handle full parsing of two-part path names
#94
adamnovak
closed
1 year ago
0
Position of path step relative to the supporting node
#93
cgroza
closed
1 year ago
1
undefined reference to `handlegraph::algorithms::dijkstra(handlegraph::HandleGraph const*, handlegraph::handle_t, std::function<bool (handlegraph::handle_t const&, unsigned long)>, bool)'
#92
cgroza
opened
1 year ago
2
Stop parsing `ARS_UCD12#hap0#6` as PanSN
#91
adamnovak
closed
1 year ago
0
enable GCC v13.1 compilation
#90
subwaystation
closed
1 year ago
1
Add a `dagify_from` algorithm
#89
adamnovak
closed
1 year ago
0
add missing else to parse_path_name()
#88
glennhickey
closed
1 year ago
0
Add more modes to Dijkstra search
#87
adamnovak
closed
1 year ago
0
Distance traceback
#86
xchang1
closed
1 year ago
0
Makefile:127: recipe for target 'all' failed
#85
8banzhuan
closed
1 year ago
3
Revise Path Metadata API
#84
adamnovak
closed
2 years ago
0
Fix the bug I just made in count walks
#83
jeizenga
closed
2 years ago
0
Fix a bug in the overflow detection in count_walks
#82
jeizenga
closed
2 years ago
0
Break out more entry points for path copy algorithm
#81
adamnovak
closed
2 years ago
1
Path metadata API
#80
adamnovak
closed
2 years ago
0
Haplotype interface
#75
glennhickey
closed
2 years ago
15
Allow tracking nodes through chop
#74
adamnovak
closed
2 years ago
0
Add NamedNodeBackTranslation and refactor BoolReturningWrapper
#73
adamnovak
closed
2 years ago
0
Hash the net handle values in a way that compiles
#72
adamnovak
closed
2 years ago
0
Hash net_handle_t values instead of addresses
#71
adamnovak
closed
2 years ago
0
Const serialize
#70
adamnovak
closed
2 years ago
0
Fix bug in unchop
#69
jeizenga
closed
3 years ago
0
De-finalize TriviallySerializable
#68
adamnovak
closed
3 years ago
0
Snarls and distance
#67
xchang1
closed
3 years ago
0
port over odgi's order-preserving chop
#66
jeizenga
closed
3 years ago
0
Add missing #includes
#65
jltsiren
closed
3 years ago
0
Migrate useful algorithm over from VG
#64
jeizenga
closed
3 years ago
0
Rip out the fiddly mmap code for libbdsg to own
#63
adamnovak
closed
3 years ago
0
Split source into multiple CPP files, and add SnarlDecomposition and TriviallySerializable
#62
adamnovak
closed
3 years ago
0
Add a default implementation for handle get_step_count method
#61
jeizenga
closed
3 years ago
0
Add a truncate method with a default implementation to DeletableHandleGraph interface
#60
jeizenga
closed
3 years ago
0
Make usable from libbdsg for libbdsg Pip installation
#59
adamnovak
closed
3 years ago
0
allow getting the step count of a handle
#58
ekg
closed
4 years ago
0
making RankedHandleGraph part of the default HandleGraph implementation
#57
ekg
opened
4 years ago
0
breaking paths and using extents to maintain contiguity
#56
ekg
opened
4 years ago
0
add specialization of increment_node_ids for long
#55
ekg
closed
4 years ago
0
undefined reference to `increment_node_ids(long)`
#54
ekg
closed
4 years ago
0
Change rewrite_segment semantics to match what libbdsg and vg implement
#53
adamnovak
closed
3 years ago
1
node naming interface
#52
ekg
opened
4 years ago
0
allow multigraphs
#51
ekg
opened
4 years ago
0
Add RankedHandleGraph with just a node/handle ordering
#50
adamnovak
closed
4 years ago
0
Add node ranks to vectorizable interface
#49
glennhickey
closed
4 years ago
0
Tighten semantics
#48
adamnovak
closed
4 years ago
0
Make for_each_step_in_path return true when done
#47
adamnovak
closed
4 years ago
0
Set up absolute install_name for Mac
#46
adamnovak
closed
4 years ago
0
Allow for portable and useful Python bindings
#45
adamnovak
closed
4 years ago
0
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