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waveygang
/
wfmash
base-accurate DNA sequence alignments using WFA and mashmap3
MIT License
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Convex penalties for the alignment patching
#229
AndreaGuarracino
closed
6 months ago
0
Tune patching
#228
AndreaGuarracino
closed
6 months ago
1
too many alignments with v0.12.6
#227
subwaystation
opened
7 months ago
20
return 1.0d ?
#226
NullModel
closed
5 months ago
1
Do not allow a segment to chain with itself
#225
bkille
closed
7 months ago
0
wfmash killed
#224
mictadlo
opened
7 months ago
0
Custom tags explanation
#223
sivico26
opened
8 months ago
1
make the script more robust
#222
AndreaGuarracino
closed
8 months ago
0
v0.12.5 emits more tabs than expected
#221
subwaystation
opened
8 months ago
2
Don't include endpoint in L2 range
#220
bkille
closed
8 months ago
0
Add error when the index is empty
#219
bkille
closed
8 months ago
0
`Floating point exception (core dumped)`
#218
subwaystation
closed
8 months ago
2
Enable one to one filtering
#217
bkille
closed
9 months ago
0
add `guix.scm`
#216
AndreaGuarracino
closed
10 months ago
1
Don't use hypergeometric model for low-complexity segments.
#215
bkille
closed
9 months ago
2
Average kmer complexities over chain in mergeMappingsInRange
#214
bkille
closed
10 months ago
0
All outputs in [0, 1] now (again)
#213
bkille
closed
10 months ago
0
fix id representation
#212
AndreaGuarracino
closed
10 months ago
0
Output ANI in [0, 1] instead of [0, 100]
#211
bkille
closed
10 months ago
0
Initialize stage2 scan flag
#210
bkille
closed
10 months ago
0
fix unset variable
#209
AndreaGuarracino
closed
10 months ago
0
Disable random dropping (for now)
#208
AndreaGuarracino
closed
10 months ago
0
skip mapping of target sequences in all-vs-one prefix mode
#207
ekg
closed
10 months ago
0
Clarify help string for -n
#206
bkille
closed
11 months ago
0
Add in random drop from mappings w/ same score
#205
bkille
closed
11 months ago
0
Flag logic in CMake is faulty
#204
zerothi
opened
11 months ago
0
Force global (a.k.a. end-to-end) alignment
#203
JingaJenga
opened
11 months ago
10
Parameters for large plant genome
#202
danielle-khost
opened
11 months ago
1
plane sweep using log block length times identity as score
#201
ekg
closed
11 months ago
0
Option `-P` leads to signal 8
#200
subwaystation
opened
1 year ago
1
How to get `-A` to work?
#199
subwaystation
opened
1 year ago
3
fix default identity to 90%
#198
AndreaGuarracino
closed
1 year ago
0
Convex BiWFA for pureWFA and patching
#197
AndreaGuarracino
closed
6 months ago
0
Use approximate filter for large segment sizes
#196
bkille
closed
1 year ago
1
More permissive patching
#195
AndreaGuarracino
closed
1 year ago
0
Limit size of DP filter
#194
bkille
closed
1 year ago
0
please bring the current version v0.10.5 to Bioconda
#193
subwaystation
closed
1 year ago
3
bugfix for mm3 merge
#192
ekg
closed
1 year ago
0
Mm3 merge
#191
bkille
closed
1 year ago
0
Added guix.scm and static build with test to CMake
#190
pjotrp
closed
5 months ago
3
Add a test for the mapping coverage
#189
AndreaGuarracino
closed
1 year ago
0
Filter n by prefix
#188
bkille
closed
1 year ago
1
Update progress bar w/ each segment
#187
bkille
closed
1 year ago
0
set chain gap to 20k
#186
ekg
closed
1 year ago
0
totally symmetric by default
#185
ekg
closed
1 year ago
0
clarify commands for target list and prefixing
#184
ekg
closed
1 year ago
0
subset targets by list or prefix
#183
ekg
closed
1 year ago
0
avoid exact mapping duplicates
#182
ekg
closed
1 year ago
0
try to install libwfa2 and friends
#181
ekg
closed
1 year ago
0
fix the build to use cmake everywhere
#180
ekg
closed
1 year ago
0
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