issues
search
wejlab
/
animalcules
R shiny app for interactive microbiome analysis
https://wejlab.github.io/animalcules-docs/
Other
52
stars
17
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Maximum Upload Size Exceeded
#70
IdanBanson
opened
3 months ago
0
Unknown "V1" taxa in abundance taxa plot
#69
IdanBanson
opened
6 months ago
6
Fixed reading in files from a directory that has more than just patho counts files in the directory
#68
jessmcc22
closed
9 months ago
0
Updated to reflect online documentation
#67
jessmcc22
closed
9 months ago
0
Update image location for documentation
#66
jessmcc22
closed
9 months ago
0
compiled NMDs changes
#65
jessmcc22
closed
9 months ago
0
Added documentation for diversity NMDS plot
#64
jessmcc22
closed
9 months ago
0
Corrected Select input for beta diversity NMDS covariates so that it …
#63
jessmcc22
closed
9 months ago
0
updated "compbiomed" references to "wejlab"
#62
jessmcc22
closed
9 months ago
0
NMDS passes all checks
#61
jessmcc22
closed
9 months ago
0
update devel version number
#60
jessmcc22
closed
9 months ago
0
Updated to depend on R version 4.3.0; added "glmnet" pacakge to sugsts; updated websites in description to reflect github switch from compbiomed to wejlab
#59
jessmcc22
closed
9 months ago
0
Update version number properly
#58
jessmcc22
closed
10 months ago
0
added Jessica as maintainer
#57
jessmcc22
closed
10 months ago
0
update version merge conflict
#56
jessmcc22
closed
10 months ago
0
updated deprecated aes_string to aes, corrected global variable warning;
#55
jessmcc22
closed
10 months ago
0
Updated devtools install
#54
jessmcc22
closed
10 months ago
0
BIOM file upload brings out error
#53
IdanBanson
closed
11 months ago
2
Fixed BioConductor Warnings
#52
jessmcc22
closed
1 year ago
0
No species level option available
#51
nunrath
opened
2 years ago
1
lazy-load database ... PathoStat.rdb is corrupt
#50
ReneKat
closed
1 year ago
3
Quick fix for read_pathoscope_data()
#49
aubreyodom
closed
2 years ago
1
Workflow separations & Correlation Analysis
#48
sktpndt97
opened
3 years ago
0
Update to include Workflow separations & correlation analysis
#47
sktpndt97
closed
3 years ago
0
Is Alpha rarefaction required?
#46
s6aamani
closed
3 years ago
1
Updating to include Workflow separations + correlation analysis
#45
sktpndt97
closed
3 years ago
0
Incorrect options for Select Target Condition in Biomarker Analysis
#44
jarrodscott
closed
3 years ago
2
Counts file - only relative abundance data
#43
davitero
closed
4 years ago
2
categorized variables need to be as.character()
#42
jasonzhao0307
closed
4 years ago
0
Adjustable graph size
#41
Zinthrow
closed
4 years ago
0
X11 colors in the barplots area?
#40
Zinthrow
closed
4 years ago
0
Biomarker names cannot handle spaces
#39
Zinthrow
closed
5 years ago
2
Import from phyloseq?
#38
cjfields
closed
4 years ago
3
linux check error related to Entrez
#37
jasonzhao0307
closed
5 years ago
3
bioc
#36
jasonzhao0307
closed
5 years ago
0
Bioconductor Reviews
#35
anfederico
closed
5 years ago
0
add detail explanation for each button/option in the screen shot
#34
jasonzhao0307
closed
5 years ago
4
add testthat
#33
jasonzhao0307
closed
5 years ago
0
Summary plot below error
#32
jasonzhao0307
closed
5 years ago
1
Alpha diversity plot continuous dot plot
#31
jasonzhao0307
closed
5 years ago
1
Modify tSNE (save the tSNE result to an assay)
#30
jasonzhao0307
closed
5 years ago
0
Modify differential abundance analysis
#29
jasonzhao0307
closed
5 years ago
1
add Limma to Differential abundance analysis using logCPM
#28
jasonzhao0307
closed
5 years ago
0
logCPM set to default assay for PCA
#27
jasonzhao0307
closed
5 years ago
0
modify the Boxplot in Abundance
#26
jasonzhao0307
closed
5 years ago
0
Add species level to animalcules
#25
jasonzhao0307
closed
5 years ago
0
Add a new assay dashboard sub-tab in the "Summary and Filter" tab
#24
jasonzhao0307
closed
5 years ago
0
Microbe filter modify
#23
jasonzhao0307
closed
5 years ago
0
Check/Fix summary statistics
#22
jasonzhao0307
closed
5 years ago
0
Complete docs (figures, descriptions, TOC)
#21
jasonzhao0307
closed
5 years ago
0
Next