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**Goal**: Submit basic metadata for (all) 2023 Trec samples
**Deadline**: ~15.9.2024
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TODO:
- [ ] Double-check all key attributes for Tara and LSI samples ([#1](1) [#2](2) [#3](3) [#4](4)…
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ENA needs to send BioSamples a request to accession the sample as well as validate it.
If it is implemented, communicate to ENA team how to do it, if not, implement it and communicate to ENA.
DOD:
-…
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Country boundaries are loaded into the db.
Compute the intersection of biosample_geographical_location vs. them, same as it is currently being done with Biomes. Add both to the same materialized view…
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Many BioSamples resolve to the same geo location through multiple attributes (ex. explciit coordinates, but also city name, also country and it's the capital, ...)
"Pruning" them will improve rende…
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**Describe the bug**
Downloading genome information on the Assembly BioSample Strain yields a column name containing an extra whitespace
**To Reproduce**
`datasets summary genome accession GCF_00…
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Search of biosample by description times out, purple loading line stops, and is left with 'data is loading' message. Is there a way to speed to this up?
![Screenshot 2024-08-06 at 9 54 27 AM](https:/…
aclum updated
1 month ago
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- are all classes instantiated at least one?
- are exhaustive examples provided for important classes like `Biosample`?
```
examples/output/Biosample-exhaustive_report.yaml: src/data/valid/Biosa…
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I'm working on porting BioSample to an NWB extension and came across this line:
https://github.com/dandi/dandi-schema/blob/c4b483911636346e53af7e14c8a0ffb30fff7457/dandischema/models.py#L1150
Do…
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@emileyfadrosh has requested tags that would make it easier to find biosamples with shared methods, funding, etc. in the Data Portal. Other NMDC team members have been supportive.
I will implement …
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### Running list of difficult Mongo queries
https://docs.google.com/spreadsheets/d/1a9cN9ZDyjVOp6NtHiaUlpP_92sMInZtQV-Q-L5iWcOk/edit?usp=sharing
Please add/edit edit Google Sheet
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In wor…