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We'd like to know how big of a rescaling factor do we need to run simulations of Drosophila (under the [Sheehan & Song demographic model](https://stdpopsim.readthedocs.io/en/latest/catalog.html#sec_ca…
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- _Drosophila melanogaster_ is an interesting subject for test data since
- the genome is small (±180Mb)
- there are only 4 chromosomes (can expect 6 chromosome arms after scaffolding because t…
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The Biological Roles of microRNAs in Drosophila Development
PMID: 39057224
Check annotation of miRNAs mentioned have been curated and potential template for GO-CAMs for general processing
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Hi,
Thank you for developing this software. I would like to try it, but I encountered some problems.
I ran MATES like this:
```python
import MATES
from MATES import bam_processor
from MATES impo…
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Hi @hattrill
Can you provide PMIDs (or other sources) for the following fly terms? These links are dead.
- [ ] GO:0045498 | sex comb development | The process whose specific outcome is the …
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For `Drosophila suzukii` and `Meloidogyne artiellia`, pathway information is `contaminant` (see [these lines](https://github.com/trias-project/ad-hoc-checklist/blob/cb63ddad1c9bd537326d292e9d29a95bd3…
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Hi, I'm using bioconductor version 3.16 with R 4.2, is there a way to install pfamAnalyzerR without having to update to R 4.4 and bioconductor 3.19?
-- this is to install IsoformSwitchAnalyzeR from…
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Hi developers,
Thanks a lot for providing a powerful tool to analyze spike-in chip-seq data. In your paper, I noticed that you always use only one antibody (such as histone modification), however, …
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Hello! I have enjoyed using ENCODExplorer but I would like to query for Drosophila melanogaster. I tried using the organism, assembly, and biosample_type. Do you support other organisms besides Homo s…
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PMID: 32815271
Species: Drosophila
Tissue: Wingdisc
Paper title: A cell atlas of adult muscle precursors uncovers early events in fibre-type divergence in Drosophila
Paper link: https://pubmed.ncb…