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(Assuming that it doesn't) it would be nice if LAPIS could support returning FASTAs with "descriptions", e.g. https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2?report=fasta has both an accession and th…
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Hello,
I have an issue with the FASTA format. It is a FASTA format which was made from the Illumina Sequencing and annotated with KREGG. We have tried a first time wihtout Uniprot annotation and i…
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Hi,
This looks like such a useful wrapper for handling large collections of Sanger sequences, thank you for publishing it!
I've read the tutorial and manual, but was wondering if it would be pos…
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I am unable to get an index for any fasta I try. Here is below what I get if I try IKZF1 as a test:
```
out/wget/https/github.com/Oshlack/Toblerone/releases/download/v0.0.8/tinyt_amd64 index -i ou…
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### Ask away!
Hi!
I ran v1.3.1 on test1.fastq.gz in wf-clone-validation-demo (downloaded using the README instructions) just to see what the HTML output would look like for a "positive control." …
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Thank you for the great tool.
I am wondering if there is anyway to generate a Fasta based on the gene fusion output. I would like to quantify TPMs with Salmon/Kallisto which require a Fasta version…
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Hello,
I have been trying to use DiffModeler to model a protein complex from the sequences and I am using mode=1 as follows:
python /projects/gt47/amondal2/Source/DiffModeler/main.py --mode=1 -F…
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Hello
I've encountered a similar issue after running pyssw.py. May I ask how you managed to resolve it?
_Originally posted by @a30221274 in https://github.com/twopin/CAMP/issues/27…
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### Description of the bug
Perhaps fasta needs to be a "required" parameter, that is, perhaps the pipeline should fail immediately if the fasta paramenter isn't set to an (existing) fasta-file?
…
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Hi,
Running the command line tool allows to pass in the fasta file.
However, it is not passed to the rescoring engine and needs to be explicitly mentioned second time in ms2rescore's config.
Th…