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nf-core
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bamtofastq
Converts bam or cram files to fastq format and does quality control.
https://nf-co.re/bamtofastq
MIT License
15
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13
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update samtools
#94
asp8200
closed
1 month ago
1
Update samtools to 1.19.2 in local module CHECK_IF_PAIRED_END
#93
asp8200
closed
2 months ago
1
Update samtools in CHECK_IF_PAIRED_END
#92
asp8200
opened
2 months ago
0
Important! Template update for nf-core/tools v2.14.1
#91
nf-core-bot
closed
2 months ago
3
Template update for nf-core/tools version 2.14.0
#90
asp8200
closed
2 months ago
5
Important! Template update for nf-core/tools v2.14.0
#89
nf-core-bot
closed
2 months ago
3
feat(subworkflow): update utils_nfcore_pipeline
#88
maxulysse
closed
2 months ago
1
Require fasta?
#87
asp8200
opened
3 months ago
1
MultiQC error with test profile using kubernetes about missing multiqc_plots
#86
SumeetTiwari07
opened
3 months ago
2
Import fasta_fai in main.nf
#85
asp8200
closed
2 months ago
1
Removing option stub from CI-test of download
#84
asp8200
closed
4 months ago
1
Release v2.1.1
#83
asp8200
closed
2 months ago
2
Update changelog for release v2.1.1
#82
asp8200
closed
4 months ago
3
Add fct getGenomeAttribute to main.nf
#81
asp8200
closed
4 months ago
1
Important! Template update for nf-core/tools v2.13.1
#80
nf-core-bot
closed
4 months ago
1
URGENT: pin nf-validation version
#79
nvnieuwk
closed
4 months ago
2
Nf core template merge 2.13 resolve conflicts
#78
asp8200
closed
4 months ago
3
Fixing less than 1000 reads issue
#77
asp8200
closed
4 months ago
1
update all modules
#76
asp8200
closed
4 months ago
1
Important! Template update for nf-core/tools v2.13
#75
nf-core-bot
closed
4 months ago
1
Update samtools
#74
asp8200
closed
5 months ago
2
Important! Template update for nf-core/tools v2.12
#73
nf-core-bot
closed
5 months ago
1
Important! Template update for nf-core/tools v2.11.1
#72
nf-core-bot
closed
5 months ago
1
Important! Template update for nf-core/tools v2.11
#71
nf-core-bot
closed
6 months ago
1
validate fastq files are not truncated
#70
ggrimes
opened
8 months ago
1
Network unreachable nodes
#69
nmendozam
closed
8 months ago
3
tweak usage.md
#68
allaway
closed
9 months ago
5
Including blank "index" column causes workflow to stall
#67
allaway
closed
4 months ago
1
CHORES: Prepare Release 2.1.0
#66
maxulysse
closed
9 months ago
1
Candidate Release 2.1.0
#65
maxulysse
closed
9 months ago
2
Important! Template update for nf-core/tools v2.10
#64
nf-core-bot
closed
9 months ago
2
Deploy nf-validation plugin
#63
SusiJo
closed
11 months ago
1
Fix subway map
#62
SusiJo
closed
12 months ago
1
Important! Template update for nf-core/tools v2.9
#61
nf-core-bot
closed
1 year ago
2
Fix subway map for dark mode
#60
SusiJo
closed
1 year ago
2
Post-release version bump
#59
SusiJo
closed
1 year ago
1
Apply formatting changes from code review
#58
SusiJo
closed
1 year ago
3
Add new zenodo doi
#57
SusiJo
closed
1 year ago
0
Add Dependencies in changelog
#56
SusiJo
closed
1 year ago
0
Code review & formatting
#55
SusiJo
closed
1 year ago
1
Apply code review suggestions
#54
SusiJo
closed
1 year ago
0
Code review from Pseudo PR
#53
SusiJo
closed
1 year ago
0
Code review
#52
SusiJo
closed
1 year ago
0
Pseudo PR - Do not merge!
#51
SusiJo
closed
1 year ago
6
First nf-core release & conversion to DSL2
#50
SusiJo
closed
1 year ago
2
Get release ready
#49
SusiJo
closed
1 year ago
0
Add igenomes
#48
SusiJo
closed
1 year ago
0
Merging template updates2.8
#47
SusiJo
closed
1 year ago
0
Important! Template update for nf-core/tools v2.8
#46
nf-core-bot
closed
1 year ago
0
Add test yml files
#45
SusiJo
closed
1 year ago
5
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