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nf-core
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bamtofastq
Converts bam or cram files to fastq format and does quality control.
https://nf-co.re/bamtofastq
MIT License
16
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13
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Dsl2
#44
FriederikeHanssen
closed
1 year ago
0
Porting pipeline to DSL2
#43
SusiJo
closed
1 year ago
3
Porting to DSL2
#42
ggabernet
closed
1 year ago
2
MultiQC error with `test` profile about missing `multiqc_plots`
#41
BrunoGrandePhD
closed
2 years ago
11
Release 1.2.0
#40
FriederikeHanssen
closed
2 years ago
1
Prepare release
#39
FriederikeHanssen
closed
2 years ago
2
Use published CRAM test data
#38
BrunoGrandePhD
closed
2 years ago
0
Publish CRAM test data
#37
BrunoGrandePhD
closed
2 years ago
2
Add support for CRAM files
#36
BrunoGrandePhD
closed
2 years ago
8
Replace pigz?
#35
FriederikeHanssen
opened
2 years ago
0
added new flags to summary and enabled fast compression
#34
SusiJo
closed
1 year ago
2
added new flag --reads_in_memory
#33
SusiJo
closed
3 years ago
1
added samtools_collate_fast and changed cat command
#32
SusiJo
closed
3 years ago
0
speed improvements
#31
ggabernet
closed
3 years ago
0
Add Susanne (&run tests)
#30
FriederikeHanssen
closed
3 years ago
0
Add contributor
#29
FriederikeHanssen
closed
3 years ago
0
release 1.1.0
#28
FriederikeHanssen
closed
3 years ago
1
Prepare release
#27
FriederikeHanssen
closed
3 years ago
0
Use fromFilePairs to ensure proper pairing
#26
FriederikeHanssen
closed
3 years ago
0
nonsense test
#25
FriederikeHanssen
closed
3 years ago
0
Fix docker build badge
#24
FriederikeHanssen
closed
3 years ago
0
Stats & some other minor changes
#23
FriederikeHanssen
closed
3 years ago
3
Edge case: less than 1000 reads
#22
FriederikeHanssen
closed
5 months ago
0
Allow index files to be provided
#21
SusiJo
closed
3 years ago
3
Allow index files as input
#20
SusiJo
closed
3 years ago
2
Correct Doc: --bam should be --input
#19
FriederikeHanssen
closed
3 years ago
1
Use seqkit?
#18
FriederikeHanssen
opened
3 years ago
0
Post release version bump
#17
FriederikeHanssen
closed
3 years ago
0
Release 1.0.0
#16
FriederikeHanssen
closed
3 years ago
0
First Release
#15
FriederikeHanssen
closed
3 years ago
2
Release 1.0
#14
FriederikeHanssen
closed
3 years ago
0
Fix README, GHA, remove nf-core in the last places
#13
FriederikeHanssen
closed
3 years ago
0
remove citation and fix dockerfile
#12
FriederikeHanssen
closed
3 years ago
1
Add GithubAction workflows for Linting and running the test profiles
#11
FriederikeHanssen
closed
3 years ago
3
Add baseDir to testdata paths and update container path
#10
matrulda
closed
3 years ago
0
Allow CRAM as input format
#9
FriederikeHanssen
closed
2 years ago
0
Update template to 1.10
#8
FriederikeHanssen
closed
1 year ago
1
DSL2
#7
FriederikeHanssen
closed
1 year ago
1
Small fixes to docs
#6
matrulda
closed
3 years ago
3
Store files needed for reporting
#5
FriederikeHanssen
opened
3 years ago
1
Documentation and things
#4
FriederikeHanssen
closed
3 years ago
9
Removing iGenomes
#3
matrulda
closed
3 years ago
0
Replace nf-core in header image with qbic
#2
FriederikeHanssen
closed
3 years ago
0
Adding things to make this release ready
#1
FriederikeHanssen
closed
3 years ago
2
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