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### Description of the bug
Download of the HGNC dataset (hgnc_complete_set.txt) fails because it is no longer available at the location the pipeline is trying to fetch it from (https://ftp.ebi.ac.uk/…
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Updates to fix or add qc exclusions for new qc check failures for https://github.com/monarch-initiative/mondo/issues/8316
FAIL Rule ../sparql/qc/mondo/qc-multiple-gene-associations.sparql: 4 viol…
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I am getting an error loading this patient
```
·Individual PMID_25411445_Patient_5 has an error with variant SO:1000029_HGNC:12799_WWOX.
Try again or remove variant from testing... Could no…
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Thank you so much for making such a handy package to extract the latest gene information from the HGNC! I'm a novice in R and data analysis, so this has been a wonderful way to get the newest details …
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This issue is related to (https://github.com/huguesrichard/Allopipe/issues/44) and refers to the special case where all alt alleles of a multiallelic site have the same gnomad AF (should also work whe…
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Some GPR identifiers are incorrectly prefixed with "HGNC:HGNC:".
Reported by Claudio Angione, Teesside University (c.angione@tees.ac.uk).
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As reported in https://github.com/NCATSTranslator/Feedback/issues/953, [UMLS:C0920288 "C-KIT Gene"](https://uts.nlm.nih.gov/uts/umls/concept/C0920288) should be a synonym of [NCBIGene:3815 "KIT"](http…
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**Describe the bug**
API endpoints `gene2transcripts` and `gene2transcripts_v2` allow for genes to be passed as "HGNC:2197". That's great for genes that have recently changed their symbols, and I'm g…
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## Context
MSstats output generally contains uniprot IDs or uniprot mnemonic IDs, but not HGNC IDs. In order to query INDRA properly, HGNC IDs are ideal. Fortunately, there are INDRA python client l…
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## Overview
There is an OMIM [release artefact](https://github.com/monarch-initiative/omim/releases) `mondo_genes.csv`. It needs to be changed into a ROBOT template.
## Sub-tasks
### I. `omim` @j…