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huguesrichard
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Allopipe
AlloPipe is a computational method to assess the alloreactivity expected from a donor/recipient transplantation pair
MIT License
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Add argument to choose number of threads used in multiprocess
#38
PierreLaville
opened
3 days ago
1
Provide new files for the tutorial
#37
adhuyser
opened
1 month ago
0
Readme VEP options: remove `--force_overwrite` & add `--fork 4`
#36
PierreLaville
closed
1 month ago
1
HLA type specification for af-AMS and multiprocess_aams.py
#35
huguesrichard
opened
1 month ago
0
Change a little the parsing
#34
huguesrichard
opened
1 month ago
0
Add pair name in csv output
#33
PierreLaville
opened
1 month ago
1
Keep track of pair names in CSV output
#32
PierreLaville
opened
1 month ago
0
Multiple pairs modus for AMS: output identification
#31
adhuyser
closed
1 month ago
1
Printed line while running AMS
#30
adhuyser
opened
1 month ago
0
Output files organisation
#29
adhuyser
opened
1 month ago
0
Deactivate -p argument for multiprocessing AMS
#28
PierreLaville
opened
1 month ago
0
Choose number of workers for multiprocessing (AMS + af-AMS)
#27
PierreLaville
opened
1 month ago
0
Create annotated_files
#26
adhuyser
closed
1 month ago
0
Delete tutorial/recipient.vcf.gz
#25
adhuyser
closed
1 month ago
0
Delete tutorial/donor.vcf.gz
#24
adhuyser
closed
1 month ago
0
Test worst consequence
#23
PierreLaville
opened
1 month ago
1
AAMS multiprocess
#22
PierreLaville
closed
1 month ago
2
Normalization
#21
PierreLaville
closed
1 month ago
1
add documentation on genome versions
#20
huguesrichard
opened
3 months ago
0
GRCh37 files parsing
#19
PierreLaville
closed
1 month ago
0
fix indentation
#18
PierreLaville
closed
1 month ago
0
AMS multiprocess from multivcf
#17
PierreLaville
closed
1 month ago
0
Inconsistent indentation across files
#16
PierreLaville
closed
1 month ago
1
Document output parameters AMS/af-AMS
#15
PierreLaville
opened
3 months ago
3
when are bedmerged used
#14
huguesrichard
closed
1 month ago
2
Fix overwrite - adding timestamp
#13
PierreLaville
closed
4 months ago
0
AMS/af-AMS multiprocess done
#12
PierreLaville
opened
4 months ago
3
NetMHCpan using multiple CPUs
#11
PierreLaville
opened
4 months ago
1
Fix D/R name in aa_ref_indiv
#10
PierreLaville
closed
4 months ago
0
Fasta parsing resistant to v.37
#9
huguesrichard
closed
1 month ago
3
AAMS run: donor/recipient input name
#8
PierreLaville
closed
4 months ago
1
AMS multiprocess overwrite
#7
PierreLaville
closed
4 months ago
2
af-AMS run: DtypeWarning
#6
PierreLaville
opened
4 months ago
0
af-AMS run: Broken pipe
#5
PierreLaville
opened
5 months ago
2
Update README.md
#4
PierreLaville
closed
4 months ago
0
Pandas v2 (> 1.5.0) incompatibility
#3
PierreLaville
opened
5 months ago
0
Update requirements.txt
#2
PierreLaville
closed
5 months ago
1
publish the documentation
#1
huguesrichard
opened
7 months ago
0