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- [ ] https://github.com/obophenotype/upheno (not possible due to https://github.com/obophenotype/upheno/issues/919)
- [ ] https://monarchinitiative.org/ (not possible due to https://github.com/monar…
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This is perhaps a slightly different type of milder error to those I've previously reported...
This Plazi-mediated dataset on GBIF: https://www.gbif.org/dataset/1e2bcc49-86c8-4612-a4eb-d9bdce9785ef…
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### Contact details
franckl@uio.no
### Dataset Title
Global deep-sea benthic Metazoa V1V2 metabarcoding dataset
### Describe your dataset and any specific challenges or blockers you have or antici…
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Dear biomaRt team,
I ran the following code and encountered an error message.
Trying other mirror sites didn't resolve the issue.
Could you please advise on how to handle this error?
```
li…
Kan-E updated
4 months ago
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The `precheck_TransPi.sh` script fails to download the UniProt Metazoa database due to changes to the API.
This is what comes back from the download command:
```
$ curl -o uniprot_metazoa_33208.fas…
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This is a row of my result
```
;SeqID MislabeledLevel OriginalLabel ProposedLabel Confidence OriginalTaxonomyPath ProposedTaxonomyPath PerRankConfidence
MN952976 Domain Pempheriformes 0.999 Meta…
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- Consistently update set of reference transcripts for library source inference and include more genes for better accuracy
- Include organisms/sources from all clades in Ensembl: Bacteria, Plants, Fu…
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Hi Richard,
How are things? We’ve been having good results with GenomeHubs so thanks very much for your help getting us to where we are.
We’ve hit a couple of issues lately which seems to be dow…
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| TestField | Value |
| ----- | ----- |
| **GUID** | 125b5493-052d-4a0d-a3e1-ed5bf792689e |
| **Label** | VALIDATION_KINGDOM_FOUND |
| **Description** | Does the value of dwc:kingdom occur at rank…
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`prokka --kingdom mito` sets the genetic code to metazoa mt (5) and enables the metazoan mitochondrial tRNA mode of Aragron `aragorn -mt`. Is `-kingdom mito` intended specifically for metazoa, or shou…