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Hi,
I setup Riboseq-flow using NextFlow and Singularity which are installed in a Conda environment. I can run the test without errors.
nextflow run iraiosub/riboseq-flow -r v1.1.1 -resume -profi…
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https://laminlabs.slack.com/archives/C046F63LJJ2/p1717166791874579
And older discussion. I'll write this up as a work package soon. Also decide whether to add this as a nf-core module or keep it fu…
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Hi,I have a few problems, hope to get your help.
my command is :
./toga.py /home/TOGAInput/query/hg38.H.g.final.chain /home/TOGAInput/human_hg38/toga.transcripts.bed /home/TOGA/hg38.2bit /home/TOG…
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Currently the readme lists SDKMAN! as a dependency, but I think the only real dependency is having a Nextflow-compatible java version installed, which on AWS EC2 I've generally just done through the s…
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### Operating System
CentOS 7
### Other Linux
CentOS 7
### Workflow Version
v.23.10.1
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
bsub -J Pore_…
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### Description of the bug
Apologies for rapid-fire bug reports. Trying to churn this analysis out before I get too busy to complete it.
The `--run_ancestry` function appears to not work on my s…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v1.1.1-g999fb4e
### Workflow Execution
Command li…
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Hi.
I've been able to run a few traits along with my data on command line (on our department's computing cluster) and I'm now trying to scale it for thousands of PGSids, by using the lsf queue system…
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This is so cool, and makes it possible for citizen scientists to run their own bioinformatics (without access to clusters!)
Could you show a couple of examples of running a vanilla hello world Next…
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The Nextflow pipeline run instructions can be simplified by using a conda environment file (`conda_env.yaml`):
```
name: sicelore-2.1
channels:
- bioconda
- conda-forge
- defaults
depen…