-
Is there any possibility to identify plasmids in the main contig so even if it's labelled as chromosome? I need to evaluate the correctness of different assemblies and would therefore like to determin…
-
Hello,
I am interested in running RFPlasmid on an Enterobacteriaceae dataset and I see there is a precomputed database for it.
However, I am wondering whether it would not be wise to create an u…
-
Related to #175
tldr: importing Euroscarf plasmids throws parsing errors. We should decide how to deal with them (handle or pass) to extract header information and support Euroscarf plasmids.
I …
-
When creating multiple PCR fragments from plasmids, I end up filling the window. Horizontal scroll is enabled, but only if I manually drag the scroll bar. The app should allow horizontal scroll while …
-
Hi there, I ran a run on the same plasmids using version 3.1.9, which I had previously run using version 3.1.5. I ran this on about a thousand plasmids. However, I have gotten several hundred plasmids…
-
All plasmids are here: https://www.addgene.org/ASAP_Discovery/
-
Goldenbraid plasmid data and maps are also available on this google drive
https://drive.google.com/drive/folders/1QIsJKr4SZyUiKJATi9qJE6ns-60s-K6u
-
https://www.ncbi.nlm.nih.gov/genome/plasmids/154?
awk -F"\t" '{print $7}' genomes_plasmids.txt -- for genbank $7, for refseq $6
esearch -db nucleotide -query CP007178 | efetch -format fasta > te…
-
I have worked with several plasmids coming from [Euroscarf](http://www.euroscarf.de). I think it would be good to support importing these plasmids as a source!
However, note that I opened one of th…
-
Related to #58, we need to distinguish between a pre-construction plasmid and a post-construction plasmid (e.g., with an insert replacing a dropout section)