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hi, from the docs it's currently not clear how to run boltz for two interacting proteins? do you keep the AF2.3MM convention of `:` or does one pass them as two separate chains with individually calcu…
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Hi, I am trying to simulate a flat membrane surface with a different inclusions (proteins). So how can I localize the protein manually. After the simulation how can I get an idea about the percentage …
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Regarding AlphaLink 2 modeling of homodimeric protein and its complex with other protein, the inherent ambiguity of self-links in homo-multimeric assemblies poses challenges in distinguishing inter- f…
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**Is your feature request related to a problem? Please describe.**
Rust-bio contains the ability to provide easy %GC with a simple command but what about the other interesting parameters
**Descri…
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Hello,
Thank you for developing such a great tool! I am currently doing protein screening based on the pulldown mode. We have several A100 GPU on a slurm based cluster. However, I just found the in…
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How can i input 2 chains into ESM3 to predict structure? I tried ":" in the sequence like esm2, but returned an error
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STATUS: DRAFT
Use case:Queries that can unify Gene expression/function/markers whether they are proteins, genes or transcripts.
TBD:
- Do we simply unify proteins/transcripts/genes or do we ma…
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Pombase
https://www.pombase.org/term/GO:0141164 0
Move these down?
https://www.pombase.org/results/from/id/3241f766-e918-482a-bebe-3e9752adfa45
I will ask SGD to make these more specific
SGD…
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Dear team, thanks for releasing the code of this powerful tool.
I tested it on a few complex targets of my interest; the results are very promising. However, it failed interfering very large protei…
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Thank you for your remarkable work on AlphaFlow and for making it open source. Recently, while running predict.py to generate protein structures, I consistently encountered abnormal structures. I susp…