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I would be very interested in seeing this package submitted to Bioconductor. Are there any plans for this? For starters, I would be very pleased to be able to excise the _monocle_ conversion code out …
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Hi! I was just following the [vignette](https://bioconductor.org/packages/release/bioc/vignettes/scAnnotatR/inst/doc/classifying-cells.html) to try scAnnotatR but it gave me an error while loading the…
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The current directory structure for the scRNA module set looks something like this:
```
training-modules/scRNA-seq$ tree
.
├── 00-scRNA-seq_introduction.md
├── 01-normalizing_scRNA-seq.Rmd
├── 0…
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Some formats of sparse matrix are causing massive allocation of memory. dgCMatrix works perfectly, using only a total of 2MB:
```
> library(scran)
> library(lineprof)
>
> nrow = …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/bhuvad/SpaNorm
Confirm the following by editing e…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LieberInstitute/DeconvoBuddies
Confirm the follow…
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I'm getting 33.4% of my UMIs predicted to be doublets (27.5% when clusters=F) and I read somewhere in the region of 10% is more usual. Any suggestions on what might've caused this? Or comments on if I…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/libscran/scrapper
Confirm the following by editin…
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When I try to run the scvelo() function I get the following error message (see attached picture). I am pretty new to R and Python and would appreciate any help to solve that issue.
![grafik](https://…