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I tried rds
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hi all
Any advice will be greatly appreciated.
I am looking at a bunch of bacterial genomes and there are certain genes that seem to slowly dissapear from isolates that were collected at a late…
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Hi @dviraran,
I would like to use xCell for deconvoluting some blood samples with a different reference profile.
I am wondering if you are using all the 5079 genes listed in "13059_2017_1349_MOESM…
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I keep throwing the same error every time I try to plot the drivers vs signatures plot:
> matprob sig.cols for(i in 1:nrow(matprob)){
+ g
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Hi everyone,
I am analysing a single cell RNAseq (as seurat object) and I have a signature/list of genes (added as a module in the seurat Metadata with AddModuleScore).
I know how to use Monocle 3 …
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Hello! I am trying to use SCINA with a very big dataset, it is ~ 25.000 genes and 80.000 cells. I Have a very large file of signatures downloaded from CellMarker (1600 signatures), but I filtered out …
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Hi,
Thank you for making this amazing package! It has been a life saver for me.
However, I ran into a problem when trying to calculate gsva results using the method "UCell".
` #annotation
hsk…
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Hi.
I met an error and there is nowhere to debug. Can you please give some hints?
```
scaled_counts
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Hi
I've question, whenever xCell performs the ssGSEA analysis, it only uses the ~10,000 genes from the immune signatures, right? So, no problem if the input matrix is a 60,000 transcript or just 20…
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Hi,
I am working on the Single cell analysis using Seurat. I am new to the SingleR, It is really very useful for the single cell level cell type prediction. I have read the SingleR documentation, bu…