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Hi @roramirezf ! thanks for providing the reproducibility code for your paper!
I would like to use the cell2location deconvoluted cell types expression from the spatial data.
(https://github.com/s…
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Need tutorials for general level classification and then a more detailed example for one subclass.
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Hello
I reproduce your research for my study of snATACseq & snRNAseq.
I downloaded all of your metadata in GEO and Synapse database, but I can't find the file included peak_region_fragments vari…
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Hi,
I tried integrating three PBMC snRNAseq data from 10X Genomics multiome datasets with two scRNA seq data from a 10X Genomics Public dataset. However, all the data from the multiome clusters sep…
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## Problem Summary
Several values in HuBMAP metadata require consolidation or mapping updates to align with the current standards. The issue affects two categories:
- **Granularity Mismatch Mapp…
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Hi all,
Previously I haven't had an issue building the app, but the latest set I have is Seurat v5, which uses layers not assays. When I try to build it, get the following error:
```r
makeShin…
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Hi,
Thank you very much for this great paper and sharing all the data. I was keen to have a look at the blood snRNAseq data. I could find the lung snRNAseq data from the link provided (ma_int.rds).…
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@tsliaw: Two orthogonal questions:
## What are the right words?
- "Raw" / "Unprocessed" / "Lab data" / "Input"?
- "Derived" / "Processed" / "Processed data" / "Output"?
## What is the right s…
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Hi @Wei-BioMath ,
I've been following the tutorial but with my own data, but then ran into problems with the netVisual_circle_neuron function when trying to plot a specific interaction pair.
Her…
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Thank you for this great tool. I am trialing to determine whether we can pool cell-lines for 10X runs and deconvolute using variants. To test I have a xenograft snRNAseq run (10X v3) that is from a si…