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I could not run the sortmerna on my computer, because it does not have enough RAM(my computer has 20G RAM )
ERROR is: Segmentation fault (core dumped).
And I will list the code at the end.
…
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Hi There,
I ran Pychopper after Dorado SUP basecaller v0.7.2 in a Linux server.
I used a command similar to:
```
pychopper -r ${SAMPLEID}_report.pdf \
-k LSK114 \
-S ${SAMPLEID}_stats.tsv \…
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Hi,
I'm encountering an issue while mapping some samples using STAR. The process begins normally and successfully maps the first sample, but then the subsequent samples are ignored. When I attempt to…
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Hello!
I run:
**reckoner -genome 4500000000 -prefix ${p} -threads 128 -kmcmemory 900 -longkmer -verbose -reuse ${r1} ${r2}** …
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Hi, I am running the paleomix pipleline, but I got an Error from the first step, could you share your help? Thank you very much.
Trimming paired end reads ...
Opening FASTQ file 'data/sample_raw_1…
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Hi,
I am trying the two methods: phmm and edlib. I found phmm has a high reproducibility, giving the same result between different runs. While edlib can give very different results. I am wondering …
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The r2 reads is specified with GTGAGTGATGGTTGAGGTAGTGTGGAG at 5'. So I use `--adapter_sequence_r2 GTGAGTGATGGTTGAGGTAGTGTGGAG` to identify the valid reads, and the command is shown below:
```
fast…
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Hi, I noticed some strange behavior when running HISAT2 (v 2.1.0) on many files at once. Some background: The data I'm working with are from 2 flow cells (fcA/B), 4 lanes each(L001/2/3/4), paired end,…
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When processing multiplexed files, the following temporary files are created in `/` (where `` is the name of a multiplexed file (without path or extension) defined in `multiplex_fq_files`):
```
_t…
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### Description of the bug
Need to remove “.fq.gz” from docs.
Files not picked up by seqtk.
### Command used and terminal output
```console
nextflow run nf-core/demo -profile singularity --input…