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Hi @faridrashidi,
I am sorry for the late reply.
I have added functions for finding normal and tumor cells in XClone BAF module (latest version via github installation).
And [XClone…
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**Preferred term label:**
Tumor signet ring cells
**Synonyms**
**Definition (free text, please give PubMed ID)**
An example is https://www.ncbi.nlm.nih.gov/medgen/?term=C1335170
**Parent …
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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/583
### Describe the goals of this analysis module.
This analysi…
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### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
#292
### Describe the goals of the changes to the analysis module.
Now that we have …
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Thank you for your outstanding tool! It is very useful in inferring CNV and is very accurate for my data.
Now I try to infer epithelial ovarian cancer cells (which are very closely associated with CN…
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We were wondering if disease associate cell types should have their own CL term. Ones that we've come across:
- cancer associated fibroblast (CAF)
- tumor associated macrophage (TAM)
Many immun…
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import random
class BloodSample:
def __init__(self, blood_type):
self.blood_type = blood_type
class Cell:
def __init__(self, cell_type):
self.cell_type = cell_type
se…
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@teng-gao
Hi,
You mentioned that clone1 is normal cells (https://kharchenkolab.github.io/numbat/articles/results.html).
Why did I get two tumor cells? Is it because the p_CNV for these two cells …
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Hello, is InferCNV suitable for hematologic tumors? I tested inferCNV with a T-cell acute lymphoblastic leukemia (T-ALL) scRNAseq that had been annotated as normal and malignant cells. However, the re…
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Hi cellxgene-census team,
I am using cellxgene to train a foundation model, and I used scGPT and cellxgene census tool to download scRNA data.
When I set the release date as "2023-05-15", I have 5M…