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Hi!
I would like to know if it is possible to use Smurf with tumor-only mode.
I know VarScan and Strelka2 can`t work with tumor-only, so I would have only the VCFs for freebayes, GATK and VarDict. I…
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erro
```
Exception: The tumor_sample and normal_sample are expected together in the header. Found only one of them
```
my vcf
```
......
##source=Mutect2
##tumor_sample=202311
#CHROM POS …
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Currently only tumor-normal VCFs are supported.
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Hi, I want to train GMS model with msd pancreas dataset. And it has 3 classes(background, pancreas, tumor).
How can I train those 3 classes with your code? I don't know which variable indicates the n…
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thanks a lot
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This is because the human gene has a preferred label of `tp53`, while the mouse gene has a preferred label of `trp53`. It is therefore being sorted below all the other genes that have a preferred labe…
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Katy provides her meeting notes from a meeting with Ajay
# US#1 CTann
Trusted repository, # tissue samples.
Which of these rows are more accurate
Make conservative predictions
How far is real…
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As an example, (I hope that this Scout-link will persist): https://scout-stage.scilifelab.se/cust087/F0049453/sv/variants/8e2113f40646b16473f9a12af4e57e0b
This is one of the variants that we're loo…
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Hi,
We have been running multiple SV callers on high coverage data (275x tumor / 156x normal). We have observed that SvABA seems to be making quite a few SV calls that are about 500bp in size and o…
mej54 updated
5 years ago
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I am currently working on a tumor bulk RNA-seq data set in order to identify somatic mutations. I have the BAM file for the tumor data set but I do not have the BAM file for a normal sample. Is there …
ghost updated
2 years ago