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Hi!
I am attempting to follow the example provided on the [CUBAR package documentation page](https://mt1022.github.io/cubar/articles/cubar.html). However, I encountered an issue when running the co…
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Yes, you can.
Basically, yeast feed on sugar and yeast's poop is alcohol. The yeast for making alcohol are super pooper, while the yeast for bread is more “bread oriented”.
I have done mead with…
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Hi Nathan,
Thank you for developing such a useful tool! When following the RERconverge Analysis Walkthrough, I can successfully complete the analysis and get the results. But when I executed **foregr…
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Hi, I am wondering if anyone has already created a visualization map with tools like Escher or DD-DeCaF. I am currently interested in doing so on yeast-GEM 9, it would be better if I can start on some…
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I was showing someone that if you give gapfilling a model that is feasible already,
even if you change the objective to be something that can be improved by knocking in some genes, it still won't say…
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### Description of the issue:
I followed the tutorial at https://sysbiochalmers.github.io/Human-GEM-guide/gem_extraction/#retrieve-the-data and successfully ran the human-GEM example.However, when us…
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Hi,
Changelog for release 0.1.4 states: "add checkpoints instanovo.pt trained on HC-PT, and instanovo_yeast.pt fine-tuned on nine-species excluding yeast."
After checking the vocab/residues for…
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Hello，您在GraphPI文章中提到的yeast数据集，那32个raw文件具体是在哪里呀（我点进去了论文中gold_yeast的网址，但是它文件和英文太多，找了半天不知道是在哪o(╥﹏╥)o）
其次那个hela-3t3数据集，您使用的是0%和100%所指示的raw文件吗？我看这个文件每个有15份（3×5），是指每组5个文件，做3次重复实验是吗？
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Related to #1762.
When you create the "Ensembl Transcript" and "Ensembl Peptide" sections on the protein pages of arabidopsis, fruitfly, yeast and sarscov2 e.g.
https://api.glygen.org/protein/d…
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What about a distinction between beer yeast, bacteria, brettanomyces?