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Thanks for this great tool! However, I have a few questions on input for cobra
1. Now I'm using megahit to assembly (I just know from #3 that it may generate many chimeric contigs, but spades may r…
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https://mp.weixin.qq.com/s/jAkmtUW1BS44CWXEAHLzmA
ixxmu updated
1 month ago
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**Describe the bug**
Annotations are missing from some plots. Most noticeably, this occurs with allele frequency quilts. Only the colors for each nucleotide are visible, but not the letters. Sometime…
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Heyhey!
I've been playing around with Milo for the analysis of a pooled single-cell CRISPR screen in the format of CROP/pertrub-seq. From what I understand through the tutorials, Milo requires tha…
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If I run `promptfoo eval` using cache (default) and the `--repeat` option, it runs the test once, caches it, and uses the cached output again for the rest of the repetitions.
This is how I'm runnin…
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- ["A benchmark of algorithms for the analysis of pooled CRISPR screens"](https://doi.org/10.1186/s13059-020-01972-x). Genome Biol (2020)
> - We suggest that in most cases, researchers should def…
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https://mp.weixin.qq.com/s/3Ah9-SCODK0W7dCd1NLOFw
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Hello!
I'm back again :)
After previous successful runs of `sceptre` both in local mac and cluster (with `parallel=FALSE`), I tried changing a parameter to improve my negative control calibration.…
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Hi Tim,
I moved the thread here.
My original question:
> I wonder whether you could add the option to define control cells as those having 0 gRNAs for the target. When doing assign_grna(), …
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Hi,
First of all, thank you SO much for releasing the updated sceptre 0.9.1. I love all the added functionalities that makes it easier to track all the details. And the tutorial book is awesome. It…