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cubism works only for time series data. Porting cubism to work with DNA data (bed files), would be beneficial for the community. In the dna branch you can find my attempts on accomplishing this. I wil…
drio updated
11 years ago
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The gene alignment step can take a long time to complete. Is it possible to add functionality to output the unaligned gene sequences to later align batches of them across a computing cluster? The pira…
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Can I ask you some questions about the code framework?I'd like to know if there's anything wrong with my understanding of the code.
Step 1: You use extract_seq.py to process the DNA sequences and pro…
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(Please excuse my amateur approach to this I am relatively new to this viewer!)
I was wondering if anyone could help me out with quantifying DNA Methylation on IGV when you are comparing two file…
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One of my layers was named "clothes", inside this folder I had few files starting with name "T-Shirt", the `_dna.split(DNA_DELIMITER)[index]` only parses the "T" within the name hence the function `co…
Xfox1 updated
2 years ago
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# Issue Report
## Please describe the issue:
Basecalling of HG002 pod5s using dorado v0.7.2 as part of wf-basecalling results in termination of basecalling for some pod5s. This run has been prev…
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Hi,
I am using angsd to produce fasta sequences, these are automatically gzipped fasta files.
If I open the fasta file with R-Biostrings the sequence compositon looks like this:
```
dna alph…
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this is
this is the error code when reaching the multifastq, this is the same pipeline as #1021
I removed some entries to make it readable.
take note the version of my snakePipes
```bash
$snak…
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**What is this request referring to?**
Defining regions of nucleosome occupancy
**What is the name you would like SO to give the term?**
Nucleosome_occupancy
**What is the definition that you …
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Hi, thanks for making IsoQuant, when i run my ont sequencing data, i got the following error. would you please kindly help to fix it. many thanks! :)
Command line: /home/cario/bin/miniconda3/envs…