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Hi,
I tried assembling the mitogenome of my insect species using MitoZ. The final assembly is not circular, with a size of 15,442 kb. Additionally, the following genes are missing:
l-rRNA
tRNA-…
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| Exercise | Description | Completion |
| -------- | ------- | ------- |
| Q1 | Load data | Yes |
| | Skipped first two lines | Yes |
| | Removed newline character | Yes |
| | Tissue names, gene …
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| Exercise | Description | Completion |
| -------- | ------- | ------- |
| Q1 | Load data | Yes |
| | Skipped first two lines | Yes |
| | Removed newline character | Yes |
| | Tissue names, gene …
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I used galba to predict gene structure. Although busco was higher than other soft, there were too many genes.
The normal value is 2.5w and the forecast is 3.3w.
Why is that?
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This is what I assumed should happen, but it doesn't appear to be the case: my reference GTF has ~61k genes (GRCh38, gencode v39) but the output `extended_annotation.gtf` does not include all the know…
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I made a strange observation. When I see the PlasmoDB gene Database, I see that there are `5254` genes but when using Biomart, I get only `4903` genes. Various characterized genes such as `"PBANKA_010…
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Hi ya'll!
I used Progressive Cactus to align whole genomes of 8 species. Then, using cactus-hal2maf with the --bedRanges option I was able to output an alignment including only genes of interest. W…
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facing issue while running cancervar.py !!
![Screenshot from 2024-06-27 22-31-00](https://github.com/WGLab/CancerVar/assets/167671737/e74527e3-c76e-476a-9854-78fb3ac66687)
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For the byssus genetic markers project that Matt George started, I'm trying to get GO terms and gene ID's for differentially expressed genes that I got through DESeq.
I am in the process of annota…
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## Describe the bug
When executing `from cellxgene_census.experimental.pp import highly_variable_genes` on 3898 cells, across 60K genes, it takes 38 seconds, and I am not sure if this is expected. …