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This is needed for improving sex genotyping performance
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Hi,
Thank you for developing the excellent `TRGT` tool. I've read your paper "_Resolving the unsolved: Comprehensive assessment of tandem repeats at scale_". To gain a better understanding, I've als…
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Dear Torsten
I am very interested HaploBlocker tool to perform haplotype block analysis of my data. Haploview with Gabriel method gave nothing special so I thought that may your algorythm would be mo…
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Hi, I'm sure I'm doing something wrong, but after a week of trial and error I still cannot find the root of the problem, so I'm asking for help here. Sorry in advance if I'm doing something stupid.
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We're trying to use SNParcher on some fairly large genomic datasets at the moment (2000 + individuals), and I am anticipating a lot of slow-down at genotyping steps. I was wondering if it's possible t…
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Testing has shown that some samples are not assigned any genotype based on the kmer scheme file but are correctly typed using the SNP scheme. This is likely the result of a missing partial assignment …
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We should create the functionality to do germline calls without tumor genotyping.
This is a backburner issue, but something to think about.
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Hi,
I have bulk RNA-seq data for each of my human samples, plus the scRNA-seq data that I would like to demultiplex with Vireo. Could I just clarify the workflow?
1. Genotype bulk RNA-seq sample…
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Many thanks for developing the tool.
Somehow I get an error that it's hardly reproducible. If I'm running GenoFLU in a single instance/sequentially it runs through without problems. However, if I'm …
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It would be nice to add a vignette that goes from reading in data from a VCF file to genotyping and filtering SNPs.