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## Expected Behavior
Hi! I'm clustering ~60000 nucleotide sequences, each 250bp to 500bp.
Here is the command I use
mmseqs cluster shrimpDB shrimp.clu97 tmp97 --cluster-mode 0 -s 7.5 --min-seq-id…
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## Expected Behavior
Convert the UniRef30 DB and the Colabfold DB success. I want to search a FASTA file using ```colabsearch.sh```
## Current Behavior
when I build database using command in [http…
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Hi! I'm working with metagenomics data, I have both long and short reads (single end) at my disposal, and before finding your tool my plan was assembling (with metaflye) and then binning (considering …
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- k-mer or gapped k-mer counter
- simple reverse complementation function
## transforms/augmentation.py
- random sub-sequence augmentation
- random reverse-complementation
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hi ,
Thanks for hifiasm development. Now,I used hifiasm v0.19.5 version to assemble a 18Gb genome, used 23X HiFi data, the RAM of our compute resource is 3Tb. The asm.ec.bin、asm.ovlp.reverse.bin …
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Hello,
I launched kevlar as such
```
kevlar novel --out output.augfastq --case ../H5A3.cleanup.reads.fa --control ../ARC_ancestor.cleanup.reads.fa -t 48 --max-fpr 1.2 -M 10G
```
It has been r…
ghost updated
3 years ago
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Hi,
I am using Sourmash to profile bacteria composition and abundance in shotgun WGS stool samples, and have two questions:
Could you expand on what you mean by this statement with regards to th…
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Hello Danial,
I am comparing 100 metagenomes, total size about 1 TB, I assigned 2Tb memory but I always have the follow error after a few hours:
#Calling Dashing2 version v2.1.9 with command '/s…
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When a kmer in a read includes IUPAC ambiguity codes, add all possible concretizations of that kmer.
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Trying to recreate some previous;y computed results and there are a few places where nondeterminism could be present and I was wondering if it could be present in this script.