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modulation = evasion
evasion = avoidance
suppression OK
induction >> to be reviewed
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When running normalize_table.py the "taxonomy" observation metadata is not properly encoded in the output file.
1) When using the `-a DESeq2` the taxonomy data is not included at all in the output f…
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Posted here!
https://taylorreiter.github.io/2022-07-28-From-raw-metagenome-reads-to-phyloseq-taxonomy-table-using-sourmash-gather-and-sourmash-taxonomy/
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Subscribe to this issue to receive updates about Brewsci/bio.
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Hi,
Been running the pipeline and get the following error for FRCBAM and REAPR, however I'm mostly interested in REAPR and can't quite find out the problem. It is installed in Utilities/cpp/Linux-x…
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I attempted to create an alignment from a seed of six sequences from four species (this is my input csv file):
===========================
species,name,aliases,sequence,accession
Homo sapiens,TTHY_…
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I have been trying to assemble a 10Mb genome with uncorrected nanopore data (3-4 chromosomes expected). We have a lot of data, is that the reason Flye fails at the end?
[2019-06-22 11:00:05] INFO: …
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Dear SqueezeMeta developers,
I know this issue I open it's more focused in a non totally SqueezeMeta related issue, but I would like to know your suggestions, if possible.
I launched SM in se…
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Ref: Pat Schloss' [recent analyses](https://www.biorxiv.org/content/10.1101/2023.06.23.546313v1.full.pdf) on rarefaction in alpha & beta diversity. This addressess well some of the long debates and co…
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**Hello, I would like to ask**
Is there any **difference** in algorithm between this and Pathoscope, and is it **more accurate** in identifying pathogenic microorganisms? Is there an advantag…