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I was checking the Monarch UI app behavior for deprecated terms and checked a page manually for a deprecated term in DOID and found that a page does exist for this concept:
http://monarchinitiative.or…
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'Models' are animals or cell line systems that can be used to study a particular condition or disease. An entity is asserted to model a disease using the is_model_of relation (RO:0003301) - and in th…
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pages such as http://bioontology.stanford.edu/phenote
reference phenote.org
phenote.org (54.83.197.87), should lead somewhere useful
whois phenote.org
Domain Name: PHENOTE.ORG
Domain ID: D138191…
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I keep seeing things that are being classified as diseases on gene and phenotype pages all coming from CTD. For example go to the ABCA4 gene page and cleft lip is being shown as a disease, should be a…
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The new Monarch beta API is not serving inferred phenotypes and added some EFO terms. The corresponding Monarch ticket is:
https://github.com/monarch-initiative/dipper/issues/824
From Kent:
"for …
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The API returns associations without relations: https://api.monarchinitiative.org/api/association/de7a6384-2fa8-4495-82bc-1027ece482bb?rows=10&page=1
This seems like a bug, though maybe it's intend…
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We stumble an interesting use case, we currently have the subdomain name owlsim.monarchinitiative.org redirecting to monarchinitiative.org/owlsim as a 301 redirect.
The current fetchURL method does n…
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**Please describe your question, suggestion, or concern.**
https://monarchinitiative.org/HGNC:29569
LIPT1 is listed as both causal and correlated for the same disease. I had assumed if a fine …
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Engase KO rescues phenotype of Ngly1 KO, http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006696
we don't have this in Monarch
https://monarchinitiative.org/genotype/MGI:5896…
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The current API implementation is returning a list of all ids but not a set. As a consequence, there are duplicated pmids:
https://api.monarchinitiative.org/api/bioentity/function/GO%3A0044598/publ…