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Hi, I have issues with Homer instalation.
So first I downloaded the configureHomer.pl file
When running `perl configureHomer.pl -install` I get this output (dir and other private info as "path-to-")…
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The [motifr documentation](https://marioangst.github.io/motifr/) does provide useful guidance on how to identify gaps and critical dyads. See example code below:
```
plot_critical_dyads(ml_net, "…
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Hi,
I'm using peaks called by MACS2 from within an existing pipeline that ultimately uses IDR to filter and produce a top-set of peaks. I'd like to use the --call-summits command to identify summit…
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Hi,professor welch:
MultiVelo is really great and I want to apply it to my own data. But I haven't see the code that build GRN and analysis with GWAS. I will be appreciate if you can share the co…
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Hi all,
Thank you for ExpansionHunterDeNovo,
I'm currently testing ExpansionHunterDeNovo on a set of ~1500 WGS case/control. Everything is fine but the merging step takes too much memory and my jo…
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- [ ] What types of knowledge and/or algorithms do we want to compute?
- [ ] specificity prediction algorithms
- [ ] gather comprehensive list of existing tools
- [ ] which algorithms will require cod…
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Hi Arkadiy, thanks very much for developing this great tool :)
I'm trying to implement FeGenie, however, near the end of the analysis this error is raised:
`Pre-processing of final outout fil…
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Hi, I am currently working on Cut&RUN data (with custom reference) with two different histone antibodies and trying to apply them to TFcomb. Here is some start codes as documentation. I used H3K4me3 a…
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Dear Phil,
After reading your paper I would be interested in checking identifying shared motifs in a particular subset of sorted T cells that undergo strong TCR signaling during their development in …
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Hello!
To detect ASD-related tandem repeat loci in my data, I'm refering to Trost et al. (2020). While I run an outlier analysis in EHdn, I have some questions.
1. I knew that depth-normalized c…