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Dear Nextclade team,
S:Y144 in v0.12.0 is now reported but is not assigned to the right clade.
We are working on a short sequence spike protein fragment that carries del 69-70 and 144, but no SNPs m…
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## Description
Sub-lineage of:BA.2.3.2
Earliest sequence: 2022-08-20
Most recent sequence: 2022-08-23
Countries circulating: Vietnam
Genomes
hCoV-19/Japan/IC-13842/2022, EPI_ISL_14853710
hCoV…
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I noticed that nextclade works if I only give the S gene sequence as input instead of the full genome. The nextclade.tsv file does not show any errors as far as I can see and I get a clade classificat…
gbbio updated
2 years ago
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Hi everyone, I'm just opening this issue to highlight that there are several sequences with an unusual mutation pattern in our most recent upload from South Africa, which will potentially represent tw…
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This sequence has mostly Ns with 1 mutation and is "recombinant". Just checking that this is intended behavior. Certainly a little confusing.
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Hi, I am trying to apply labelplacement on my amt tree but I keep getting an error related to gappa:
```
(traits) rlaso@elbrus:/data/mcm/rlaso/Traits/Phylogenetic_trees/Nitrogen_cycle/Amt/results/…
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As per the CAMI2 meeting presentation, we found that the UniFrac metric was [relatively unhelpful](https://nextcloud.bifo.helmholtz-hzi.de/s/2R42BfaTe96Csje) in ranking tools.
This issue will explo…
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### Description
**Recombinant between**: BA.2 & BA.1*
**Earliest sequence**: 2022/2/25 (Spain-Balearic Islands)
**Most recent sequence**: 2022/3/11 (Spain-Balearic Islands)
**Countries circulating…
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@OmkarSaMo I think we should define the scope of the workflow (at least for the first version/release). This will help us to focus on delivering a stable release.
I think this tagline you wrote is …